RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 C3orf36Q3SXR2 165 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 ZNF684Q5T5D7 378 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 RNLSQ5VYX0 342 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 ZNF773Q6PK81 442 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 DEGS2Q6QHC5 323 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 TMEM108Q6UXF1 575 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 MEX3BQ6ZN04 569 aaKnown RBP8.33□□□□□ -1.08
CUX1-216ENST00000558469 NAA40Q86UY6 237 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 DMRTC2Q8IXT2 367 aaPredicted RBP8.33□□□□□ -1.08
CUX1-216ENST00000558469 SPARTQ8N0X7 666 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 SYS1Q8N2H4 156 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 PAQR4Q8N4S7 273 aaPredicted RBP8.33□□□□□ -1.08
CUX1-216ENST00000558469 ZNF283Q8N7M2 679 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 OR1J2Q8NGS2 313 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 SPRYD4Q8WW59 207 aaPredicted RBP8.33□□□□□ -1.08
CUX1-216ENST00000558469 GATAD2BQ8WXI9 593 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 PELI1Q96FA3 418 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 KCNJ15Q99712 375 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 KCNS3Q9BQ31 491 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 MND1Q9BWT6 205 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 HELZ2Q9BYK8 2649 aaKnown RBP8.33□□□□□ -1.08
CUX1-216ENST00000558469 ZNF696Q9H7X3 374 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 NIPAL2Q9H841 368 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 CDH20Q9HBT6 801 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 BRD7Q9NPI1 651 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 ACOXLQ9NUZ1 547 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 CRIM1Q9NZV1 1036 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 ATPIF1Q9UII2 106 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 GRIP1Q9Y3R0 1128 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 N6AMT1Q9Y5N5 214 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 CADP27708 2225 aa8.33□□□□□ -1.08
CUX1-216ENST00000558469 A0A087WXM4 84 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 IGHV2OR16-5A0A0B4J2B6 119 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 TMEM269A0A1B0GVZ9 245 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 MAGEA13PA6NCF6 341 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 DPRXA6NFQ7 191 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 M0R135 149 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ABHD16AO95870 558 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 CRYAAP02489 173 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 MT-ND5P03915 603 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ACSM4P0C7M7 580 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 SLC2A1P11166 492 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 EPXP11678 715 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ZNF35P13682 527 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ATP6V1B1P15313 513 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 IGFBP2P18065 325 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 PTAFRP25105 342 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 CD40P25942 277 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 CALCRP30988 508 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 OTX1P32242 354 aaPredicted RBP8.32□□□□□ -1.08
CUX1-216ENST00000558469 WNT4P56705 351 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ZNF121P58317 390 aaPredicted RBP8.32□□□□□ -1.08
CUX1-216ENST00000558469 NAAAQ02083 359 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 EMX1Q04741 257 aaPredicted RBP8.32□□□□□ -1.08
CUX1-216ENST00000558469 HGFACQ04756 655 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 BSPH1Q075Z2 132 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 MED22Q15528 200 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 KRTAP27-1Q3LI81 207 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 LIPNQ5VXI9 398 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 KLBQ86Z14 1044 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 SVOPQ8N4V2 548 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 IL17RDQ8NFM7 739 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 OR52N1Q8NH53 320 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ZNF799Q96GE5 643 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 PLPPR2Q96GM1 343 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 RADILQ96JH8 1075 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 C4orf45Q96LM5 186 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 OR5M11Q96RB7 305 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 DCLRE1CQ96SD1 692 aaKnown RBP8.32□□□□□ -1.08
CUX1-216ENST00000558469 DOK1Q99704 481 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 OR51B6Q9H340 312 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ESRP2Q9H6T0 727 aaKnown RBP8.32□□□□□ -1.08
CUX1-216ENST00000558469 GTF2A1LQ9UNN4 478 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 COL12A1Q99715 3063 aa8.32□□□□□ -1.08
CUX1-216ENST00000558469 ANKHD1Q8IWZ3 2542 aaKnown RBP8.32□□□□□ -1.08
CUX1-216ENST00000558469 LRRK2Q5S007 2527 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 E9PI62 339 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 ABCD4O14678 606 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 SRSF10O75494 262 aaKnown RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 PNPP00491 289 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 APOC1P02654 83 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 LCATP04180 440 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 ANXA2P07355 339 aaKnown RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 FAM157BP0CG42 384 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 PCMT1P22061 227 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 DCTDP32321 178 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 WNT5AP41221 380 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 GTF2A1P52655 376 aaPredicted RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 GBX2P52951 348 aaPredicted RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 MFGE8Q08431 387 aaPredicted RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 SPOCK1Q08629 439 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 SPHARQ15513 63 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 TBCEQ15813 527 aaPredicted RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 ZNF829Q3KNS6 432 aaPredicted RBP8.31□□□□□ -1.08
CUX1-216ENST00000558469 NCMAPQ5T1S8 102 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 ARL9Q6T311 187 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 DRAM2Q6UX65 266 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 FAM57BQ71RH2 274 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 EGFL6Q8IUX8 553 aa8.31□□□□□ -1.08
CUX1-216ENST00000558469 ZNF485Q8NCK3 441 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms