RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 POU2F3Q9UKI9 436 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 SLC17A2O00624 439 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 RER1O15258 196 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 PLA2G10O15496 165 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 SULT1B1O43704 296 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 GLSO94925 669 aaPredicted RBP14.86□□□□□ -0.03
LDLR-206ENST00000557958 LHX2P50458 406 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 RAB11BQ15907 218 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 RIPPLY2Q5TAB7 128 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.86□□□□□ -0.03
LDLR-206ENST00000557958 TMEM251Q8N6I4 163 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 SYNPRQ8TBG9 265 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 ROBO4Q8WZ75 1007 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 ZC3HAV1LQ96H79 300 aaKnown RBP14.86□□□□□ -0.03
LDLR-206ENST00000557958 EMC3Q9P0I2 261 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 MCTS1Q9ULC4 181 aaKnown RBP14.86□□□□□ -0.03
LDLR-206ENST00000557958 MRPS7Q9Y2R9 242 aaKnown RBP14.86□□□□□ -0.03
LDLR-206ENST00000557958 CENPXA8MT69 81 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 P2RY10O00398 339 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 EEF1E1O43324 174 aaKnown RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 TTRP02766 147 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 ADRB1P08588 477 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 ACSM4P0C7M7 580 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 IGFBP3P17936 291 aaPredicted RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 PPIAP62937 165 aaKnown RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 MRPS10P82664 201 aaKnown RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 PLET1Q6UQ28 207 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 ZNF283Q8N7M2 679 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 ZFP62Q8NB50 900 aaPredicted RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 DNAAF1Q8NEP3 725 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 CPT1CQ8TCG5 803 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 TMEM45BQ96B21 275 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 FOXRED1Q96CU9 486 aaPredicted RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 ZFP3Q96NJ6 502 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 ABHD1Q96SE0 405 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 PNRC2Q9NPJ4 139 aaKnown RBP14.85□□□□□ -0.03
LDLR-206ENST00000557958 TAS2R4Q9NYW5 299 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 RAXQ9Y2V3 346 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 ZFHX4Q86UP3 3567 aa14.85□□□□□ -0.03
LDLR-206ENST00000557958 A0A1B0GVC2 190 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 FAM240BA0A1B0GVZ2 78 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 A6NIN4 97 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 GSTZ1O43708 216 aaPredicted RBP14.84□□□□□ -0.03
LDLR-206ENST00000557958 SSX4O60224 188 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 ACTL6AO96019 429 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 ZNF708P17019 499 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 S100A1P23297 94 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 CTSSP25774 331 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 CX3CR1P49238 355 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 CLDN12P56749 244 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 PHYHD1Q5SRE7 291 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 FAM27BQ5VT28 67 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 SERPINA12Q8IW75 414 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 TRIM63Q969Q1 353 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 NABP1Q96AH0 204 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 HAVCR1Q96D42 359 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 SLC25A38Q96DW6 304 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 ZNF486Q96H40 463 aaPredicted RBP14.84□□□□□ -0.03
LDLR-206ENST00000557958 ZNF275Q9NSD4 429 aaPredicted RBP14.84□□□□□ -0.03
LDLR-206ENST00000557958 CFAP47Q6ZTR5 3102 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 CACNA1CQ13936 2221 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 KIAA1549Q9HCM3 1950 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 IGKV3D-15A0A087WSY6 115 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 TNFSF10P50591 281 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 PRKXP51817 358 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 CLDN18P56856 261 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 ZNF121P58317 390 aaPredicted RBP14.84□□□□□ -0.03
LDLR-206ENST00000557958 ENDOGQ14249 297 aaKnown RBP14.84□□□□□ -0.03
LDLR-206ENST00000557958 SLC10A1Q14973 349 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 TMEM69Q5SWH9 247 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 COMMD2Q86X83 199 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 FAM109AQ8N4B1 249 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 CELF2-AS1Q8N7Q2 184 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 OR5D14Q8NGL3 314 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 OR6M1Q8NGM8 313 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 SMIM4Q8WVI0 70 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 PHF21AQ96BD5 680 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 ACKR4Q9NPB9 350 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 SLC17A5Q9NRA2 495 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 PARPBPQ9NWS1 579 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 LOC400499M0QZD8 3231 aa14.84□□□□□ -0.03
LDLR-206ENST00000557958 LOC100289279A0A1B0GTE1 492 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 OR6C65A6NJZ3 312 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 ERCC1P07992 297 aaPredicted RBP14.83□□□□□ -0.04
LDLR-206ENST00000557958 CELA3AP09093 270 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 TRAPPC2P0DI81 140 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 TRAPPC2BP0DI82 140 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 ZNF20P17024 532 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 PLA2G5P39877 138 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 MNDAP41218 407 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 SRYQ05066 204 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 ELFN2Q5R3F8 820 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 LINGO2Q7L985 606 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 CHMP1BQ7LBR1 199 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 TOMM5Q8N4H5 51 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 DTX3Q8N9I9 347 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 SCMH1Q96GD3 660 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 NEDD4LQ96PU5 975 aa14.83□□□□□ -0.04
LDLR-206ENST00000557958 C7orf50Q9BRJ6 194 aaKnown RBP14.83□□□□□ -0.04
LDLR-206ENST00000557958 SLC6A15Q9H2J7 730 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms