RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 NTN4Q9HB63 628 aa12.31□□□□□ -0.44
SHMT2-235ENST00000557740 SRA1Q9HD15 236 aaKnown RBP12.31□□□□□ -0.44
SHMT2-235ENST00000557740 GCM1Q9NP62 436 aa12.31□□□□□ -0.44
SHMT2-235ENST00000557740 MMP26Q9NRE1 261 aa12.31□□□□□ -0.44
SHMT2-235ENST00000557740 TMCC3Q9ULS5 477 aa12.31□□□□□ -0.44
SHMT2-235ENST00000557740 B9D1Q9UPM9 204 aa12.31□□□□□ -0.44
SHMT2-235ENST00000557740 LRCH1Q9Y2L9 728 aa12.31□□□□□ -0.44
SHMT2-235ENST00000557740 POLR3KQ9Y2Y1 108 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-235ENST00000557740 TENM1Q9UKZ4 2725 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 TMEM89A2RUT3 159 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 LRRC30A6NM36 301 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 CEACAM18A8MTB9 384 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 ARPC3O15145 178 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 HLA-DQA2P01906 255 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 SEMG1P04279 462 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 HSD17B1P14061 328 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 RPS2P15880 293 aaKnown RBP12.3□□□□□ -0.44
SHMT2-235ENST00000557740 ZNF12P17014 697 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 SLC6A9P48067 706 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 UBA52P62987 128 aaKnown RBP12.3□□□□□ -0.44
SHMT2-235ENST00000557740 ECH1Q13011 328 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 SAMD4BQ5PRF9 694 aaKnown RBP12.3□□□□□ -0.44
SHMT2-235ENST00000557740 LINC00346Q8IVM7 164 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 OR6V1Q8N148 313 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 DVL3Q92997 716 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-235ENST00000557740 PITX2Q99697 317 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 ATF6BQ99941 703 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 CDADC1Q9BWV3 514 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 PLA2G12AQ9BZM1 189 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 WDR76Q9H967 626 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 ESM1Q9NQ30 184 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 DDX28Q9NUL7 540 aaKnown RBP12.3□□□□□ -0.44
SHMT2-235ENST00000557740 NUP50Q9UKX7 468 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 PPIAL4AQ9Y536 164 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 INSIG2Q9Y5U4 225 aa12.3□□□□□ -0.44
SHMT2-235ENST00000557740 IGHV3-64DA0A0J9YX35 117 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 IQCF6A8MYZ5 107 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 F5H5K5 113 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 F5H5P2 479 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 TRAPPC2LH3BP13 241 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 ARPC2O15144 300 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 IDH3BO43837 385 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 SNX3O60493 162 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 CYB5R3P00387 301 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-235ENST00000557740 RRM2P31350 389 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 MALLQ13021 153 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 SLC18B1Q6NT16 456 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 CFAP77Q6ZQR2 320 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 CPLX4Q7Z7G2 160 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 MOGAT3Q86VF5 341 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 C1orf87Q8N0U7 546 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 PGAM4Q8N0Y7 254 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 SIGLECL1Q8N7X8 197 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 ZDHHC22Q8N966 263 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 SDR9C7Q8NEX9 313 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 OR52L1Q8NGH7 329 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 ZNF420Q8TAQ5 688 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-235ENST00000557740 SLC30A2Q9BRI3 323 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 SSBP3Q9BWW4 388 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-235ENST00000557740 C1QTNF5Q9BXJ0 243 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 FN3KQ9H479 309 aa12.29□□□□□ -0.44
SHMT2-235ENST00000557740 DYSFO75923 2080 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 H0YL77 283 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 ZNF205O95201 554 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 ACSM4P0C7M7 580 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 CPT2P23786 658 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 GSSP48637 474 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 DBPQ10586 325 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-235ENST00000557740 TRAP1Q12931 704 aaKnown RBP12.28□□□□□ -0.44
SHMT2-235ENST00000557740 BTNL3Q6UXE8 466 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 ZNF620Q6ZNG0 422 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 COLCA1Q6ZS62 124 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 NLRC3Q7RTR2 1065 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 ZBTB46Q86UZ6 589 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 GNPDA2Q8TDQ7 276 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 TMEM100Q9NV29 134 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 MIOXQ9UGB7 285 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 KCNG2Q9UJ96 466 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 ARHGAP32A7KAX9 2087 aa12.28□□□□□ -0.44
SHMT2-235ENST00000557740 MLNRO43193 412 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 LCATP04180 440 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 WNT2P09544 360 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 IRF2P14316 349 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 MSX2P35548 267 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-235ENST00000557740 TPTEP56180 551 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 PRSS12P56730 875 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 GNB2P62879 340 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 MXRA7P84157 204 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.27□□□□□ -0.45
SHMT2-235ENST00000557740 TSPAN31Q12999 210 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 GK2Q14410 553 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-235ENST00000557740 ZNF181Q2M3W8 571 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 KRTAP27-1Q3LI81 207 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 AWAT1Q58HT5 328 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 CLEC12AQ5QGZ9 265 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 SLC35F1Q5T1Q4 408 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 RPL13AP3Q6NVV1 102 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 C16orf89Q6UX73 402 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 DOK3Q7L591 496 aa12.27□□□□□ -0.45
SHMT2-235ENST00000557740 MRPL21Q7Z2W9 205 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms