RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 OGG1O15527 345 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 LMX1BO60663 402 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 HOXC4P09017 264 aaPredicted RBP13.34□□□□□ -0.27
CUX1-215ENST00000556210 QDPRP09417 244 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 DPP4P27487 766 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 SLC26A5P58743 744 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 TAS2R19P59542 299 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 KLF9Q13886 244 aaPredicted RBP13.34□□□□□ -0.27
CUX1-215ENST00000556210 SLC25A24Q6NUK1 477 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 GLIPR1L1Q6UWM5 242 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 OR1J4Q8NGS1 313 aa13.34□□□□□ -0.27
CUX1-215ENST00000556210 WDR89Q96FK6 387 aaPredicted RBP13.34□□□□□ -0.27
CUX1-215ENST00000556210 GBF1Q92538 1859 aa13.33□□□□□ -0.27
CUX1-215ENST00000556210 CSNK1A1P48729 337 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 CCL7P80098 99 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 FGL1Q08830 312 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 ASB17Q8WXJ9 295 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 OR8B4Q96RC9 309 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 IGKV1D-42A0A075B6H8 117 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 A6NIZ1 184 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 LAMTOR5O43504 91 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 PNPP00491 289 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 CXCL2P19875 107 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 AVPR2P30518 371 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 RAP1BP61224 184 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 RAP1AP62834 184 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 PDCD1Q15116 288 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 CEBPEQ15744 281 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 ABCA11PQ4W5N1 156 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 MCEMP1Q8IX19 187 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 OR52N5Q8NH56 324 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 ELP5Q8TE02 316 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 PAQR8Q8TEZ7 354 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 MRI1Q9BV20 369 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 SLC19A3Q9BZV2 496 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 PRR13Q9NZ81 148 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 PRRC2CQ9Y520 2896 aaKnown RBP13.33□□□□□ -0.28
CUX1-215ENST00000556210 PHF3Q92576 2039 aaKnown RBP13.33□□□□□ -0.28
CUX1-215ENST00000556210 PRR32B1ATL7 298 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 SULT1B1O43704 296 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 FASLGP48023 281 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 GABRG1Q8N1C3 465 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 FAM71CQ8NEG0 241 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 C11orf40Q8WZ69 217 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 DCUN1D4Q92564 292 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 EDARQ9UNE0 448 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 B3GALT1Q9Y5Z6 326 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 SPEGQ15772 3267 aa13.33□□□□□ -0.28
CUX1-215ENST00000556210 KCNAB3O43448 404 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 ZNF205O95201 554 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 PRH1P02810 166 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 FAM157BP0CG42 384 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 TMEM255AQ5JRV8 349 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 SCARF2Q96GP6 870 aaPredicted RBP13.32□□□□□ -0.28
CUX1-215ENST00000556210 PARP12Q9H0J9 701 aaKnown RBP13.32□□□□□ -0.28
CUX1-215ENST00000556210 AKIRIN1Q9H9L7 192 aaPredicted RBP13.32□□□□□ -0.28
CUX1-215ENST00000556210 OR4C45A6NMZ5 311 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 FADS1O60427 444 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 EIF4E2O60573 245 aaKnown RBP13.32□□□□□ -0.28
CUX1-215ENST00000556210 EFNB1P98172 346 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 SMCO1Q147U7 214 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 OR11G2Q8NGC1 345 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 URM1Q9BTM9 101 aaKnown RBP13.32□□□□□ -0.28
CUX1-215ENST00000556210 ULBP2Q9BZM5 246 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 GPR84Q9NQS5 396 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 SLC22A23A1A5C7 686 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 GUSBP08236 651 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 PATE4P0C8F1 98 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 FCGR2AP12318 317 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 EGR4Q05215 589 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 MYBPHQ13203 477 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 MRGPREQ86SM8 312 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 OR5H2Q8NGV7 314 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 HAO2Q9NYQ3 351 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 MRPS28Q9Y2Q9 187 aaKnown RBP13.32□□□□□ -0.28
CUX1-215ENST00000556210 MTCH2Q9Y6C9 303 aa13.32□□□□□ -0.28
CUX1-215ENST00000556210 LILRA5A6NI73 299 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 ADRA2CP18825 462 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 LAP3P28838 519 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 BTCP35070 178 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 GABREP78334 506 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 CLVS2Q5SYC1 327 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 STOML3Q8TAV4 291 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 VRK1Q99986 396 aaPredicted RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 PLEKHJ1Q9NW61 149 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 PISDQ9UG56 409 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 NSG1A0A0A6YYJ2 146 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 TUBAL3A6NHL2 446 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 POU2F2P09086 479 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 UBBP0CG47 229 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 UBCP0CG48 685 aaKnown RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 CTRB1P17538 263 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 BLVRBP30043 206 aaPredicted RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 RPS27AP62979 156 aaKnown RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 UBA52P62987 128 aaKnown RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 CTRB2Q6GPI1 263 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 FJX1Q86VR8 437 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 MUC20Q8N307 709 aaPredicted RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 OR4K15Q8NH41 348 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 RHBDD1Q8TEB9 315 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms