RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CXXC5Q7LFL8 322 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 ZNF283Q8N7M2 679 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 PAPD5Q8NDF8 572 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 OR2AJ1Q8NGZ0 328 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 OR4Q3Q8NH05 313 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 OR51F2Q8NH61 342 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 CANT1Q8WVQ1 401 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 TMEM186Q96B77 213 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 MAP6Q96JE9 813 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 PITX2Q99697 317 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 MDFIQ99750 246 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 CDADC1Q9BWV3 514 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 FN3KQ9H479 309 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 YY1AP1Q9H869 796 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 CMC2Q9NRP2 79 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 TMEFF2Q9UIK5 374 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 CACNG2Q9Y698 323 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 COMMD3-BMI1R4GMX3 469 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 TRAV20A0A0B4J274 112 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 TCRBV3S1A0A5B6 114 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 FAM157AC9JC47 383 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 IFNGP01579 166 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 IGHV2-5P01817 119 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF823P16415 610 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 SELEP16581 610 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 PPP1R8Q12972 351 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 CRMP1Q14194 572 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 FLOT2Q14254 428 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 LINC00346Q8IVM7 164 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 CYB561A3Q8NBI2 242 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 PROKR2Q8NFJ6 384 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 OR8G5Q8NG78 346 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 SPATA3Q8NHX4 192 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 GIPC3Q8TF64 312 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 FEVQ99581 238 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 NIPSNAP1Q9BPW8 284 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF665Q9H7R5 613 aa13.58□□□□□ -0.24
CCDC88C-209ENST00000554872 DNAJC8O75937 253 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 SOX14O95416 240 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 FSTL3O95633 263 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 HLA-DQA2P01906 255 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF3P17036 446 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 PYCR1P32322 319 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 GRK5P34947 590 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 ACSM5Q6NUN0 579 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 PEG10Q86TG7 708 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 OR10S1Q8NGN2 331 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 OR13G1Q8NGZ3 307 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 TEX47Q8TBZ9 253 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 CCL17Q92583 94 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 SLC30A2Q9BRI3 323 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 ARMC1Q9NVT9 282 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 TREM2Q9NZC2 230 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 POMPQ9Y244 141 aa13.57□□□□□ -0.24
CCDC88C-209ENST00000554872 RIIAD1A6NNX1 92 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 IGHV2-70P01814 119 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 SPI1P17947 270 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 CPT2P23786 658 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 FMO3P31513 532 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 ENTPD1P49961 510 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 ERFP50548 548 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 TPTEP56180 551 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 MVKQ03426 396 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 DBPQ10586 325 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 BNIP1Q12981 228 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 HLXQ14774 488 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 LINC01590Q5TEZ4 76 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 DRAM2Q6UX65 266 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 RHOUQ7L0Q8 258 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 TEX29Q8N6K0 151 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 OR2Z1Q8NG97 314 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNRF4Q8WWF5 429 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 DNAJC9Q8WXX5 260 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 SPTSSAQ969W0 71 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF582Q96NG8 517 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 HCAR1Q9BXC0 346 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 NARFLQ9H6Q4 476 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 MARCH7Q9H992 704 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 TMEM106BQ9NUM4 274 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 HIF1ANQ9NWT6 349 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 PTTG3PQ9NZH4 202 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 NPTNQ9Y639 398 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 STAB1Q9NY15 2570 aa13.56□□□□□ -0.24
CCDC88C-209ENST00000554872 PPIAL4EA0A075B759 164 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 PPIAL4CA0A0B4J2A2 164 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 PPIAL4DF5H284 164 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 M0R135 149 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 PPIAL4FP0DN26 164 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 GATA3P23771 443 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF181Q2M3W8 571 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 TMEM155Q4W5P6 130 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 SPRNQ5BIV9 151 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 AVPI1Q5T686 147 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 CELF2-AS1Q8N7Q2 184 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 OR9Q1Q8NGQ5 310 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 ST7LQ8TDW4 575 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 TMEM158Q8WZ71 300 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 NRBF2Q96F24 287 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF799Q96GE5 643 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms