RNA–Protein interactions for RNA: ENST00000553617.5

TDP1-207, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 876 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-207ENST00000553617 UNC93AQ86WB7 457 aa3□□□□□ -1.93
TDP1-207ENST00000553617 DHFR2Q86XF0 187 aa3□□□□□ -1.93
TDP1-207ENST00000553617 PHF13Q86YI8 300 aaPredicted RBP3□□□□□ -1.93
TDP1-207ENST00000553617 KRTAP7-1Q8IUC3 87 aa3□□□□□ -1.93
TDP1-207ENST00000553617 TRAPPC5Q8IUR0 188 aa3□□□□□ -1.93
TDP1-207ENST00000553617 APRG1Q8IVJ8 170 aa3□□□□□ -1.93
TDP1-207ENST00000553617 SVOPLQ8N434 492 aa3□□□□□ -1.93
TDP1-207ENST00000553617 CCDC54Q8NEL0 328 aa3□□□□□ -1.93
TDP1-207ENST00000553617 OR52I1Q8NGK6 324 aa3□□□□□ -1.93
TDP1-207ENST00000553617 PIGXQ8TBF5 258 aa3□□□□□ -1.93
TDP1-207ENST00000553617 APH1BQ8WW43 257 aa3□□□□□ -1.93
TDP1-207ENST00000553617 MRPS31Q92665 395 aaKnown RBP3□□□□□ -1.93
TDP1-207ENST00000553617 TOMM40LQ969M1 308 aa3□□□□□ -1.93
TDP1-207ENST00000553617 ZNF689Q96CS4 500 aaPredicted RBP3□□□□□ -1.93
TDP1-207ENST00000553617 XPO6Q96QU8 1125 aaKnown RBP3□□□□□ -1.93
TDP1-207ENST00000553617 ECSITQ9BQ95 431 aa3□□□□□ -1.93
TDP1-207ENST00000553617 SEC22CQ9BRL7 303 aa3□□□□□ -1.93
TDP1-207ENST00000553617 ZNF2Q9BSG1 426 aaPredicted RBP3□□□□□ -1.93
TDP1-207ENST00000553617 TIPINQ9BVW5 301 aa3□□□□□ -1.93
TDP1-207ENST00000553617 ZNF717Q9BY31 904 aaPredicted RBP3□□□□□ -1.93
TDP1-207ENST00000553617 MRPS26Q9BYN8 205 aaKnown RBP3□□□□□ -1.93
TDP1-207ENST00000553617 ALX4Q9H161 411 aaPredicted RBP3□□□□□ -1.93
TDP1-207ENST00000553617 ANKRD19PQ9H560 264 aa3□□□□□ -1.93
TDP1-207ENST00000553617 ZNF385DQ9H6B1 395 aa3□□□□□ -1.93
TDP1-207ENST00000553617 C11orf49Q9H6J7 331 aa3□□□□□ -1.93
TDP1-207ENST00000553617 FGFR1OP2Q9NVK5 253 aa3□□□□□ -1.93
TDP1-207ENST00000553617 GPATCH2LQ9NWQ4 482 aa3□□□□□ -1.93
TDP1-207ENST00000553617 RMND1Q9NWS8 449 aa3□□□□□ -1.93
TDP1-207ENST00000553617 VNN3Q9NY84 501 aa3□□□□□ -1.93
TDP1-207ENST00000553617 MAT2BQ9NZL9 334 aa3□□□□□ -1.93
TDP1-207ENST00000553617 TMEM9Q9P0T7 183 aa3□□□□□ -1.93
TDP1-207ENST00000553617 NUP50Q9UKX7 468 aa3□□□□□ -1.93
TDP1-207ENST00000553617 NDRG2Q9UN36 371 aaKnown RBP3□□□□□ -1.93
TDP1-207ENST00000553617 PSG11Q9UQ72 335 aa3□□□□□ -1.93
TDP1-207ENST00000553617 ARL2BPQ9Y2Y0 163 aa3□□□□□ -1.93
TDP1-207ENST00000553617 AQRO60306 1485 aaKnown RBP eCLIP3□□□□□ -1.932e-7■■■■□ 20.2
TDP1-207ENST00000553617 ZFYVE9O95405 1425 aa3□□□□□ -1.93
TDP1-207ENST00000553617 KIF24Q5T7B8 1368 aa3□□□□□ -1.93
TDP1-207ENST00000553617 TNRQ92752 1358 aa3□□□□□ -1.93
TDP1-207ENST00000553617 USP42Q9H9J4 1324 aaKnown RBP2.99□□□□□ -1.93
TDP1-207ENST00000553617 ZNF532Q9HCE3 1301 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 A0A1B0GVI7 797 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 A0A1B0GWB2 263 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 PSMB11A5LHX3 300 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 VSTM2BA6NLU5 285 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 TRDCB7Z8K6 153 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ATP6V1G2-DDX39BF2Z307 99 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 hCG_2039718K7EN88 272 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 M0QZ92 97 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 M0QZK8 103 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 SULT2B1O00204 365 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 DFFAO00273 331 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 CCRL2O00421 344 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 PPP1R2P9O14990 202 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 TOM1O60784 492 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 MED6O75586 246 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ATP5LO75964 103 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 IFNA21P01568 189 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 P04436 131 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ALDOBP05062 364 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 LGALS2P05162 132 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 CRHP06850 196 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 KLK1P06870 262 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ZDHHC11BP0C7U3 371 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 LINC00614P0C842 121 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 THRAP10827 490 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ICAM2P13598 275 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 COX5AP20674 150 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 IVDP26440 423 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 HMGB2P26583 209 aaKnown RBP2.99□□□□□ -1.93
TDP1-207ENST00000553617 FGF9P31371 208 aaPredicted RBP2.99□□□□□ -1.93
TDP1-207ENST00000553617 SHMT2P34897 504 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 OPRD1P41143 372 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 PTGDSP41222 190 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 GPR1P46091 355 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 XCR1P46094 333 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 LMO4P61968 165 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 PSPHP78330 225 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 MRPS11P82912 194 aaKnown RBP2.99□□□□□ -1.93
TDP1-207ENST00000553617 SRSF6Q13247 344 aaKnown RBP2.99□□□□□ -1.93
TDP1-207ENST00000553617 RAB31Q13636 194 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ACSM3Q53FZ2 586 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 SYPL2Q5VXT5 272 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 FRMPD2BQ6IN97 320 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 FAM45BPQ6NSW5 357 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 DNM1P34Q6PK57 102 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 SPESP1Q6UW49 350 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ENPP6Q6UWR7 440 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 C5orf46Q6UWT4 87 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 SSX7Q7RTT5 188 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 SSX6Q7RTT6 188 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 TMED4Q7Z7H5 227 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 LYG2Q86SG7 212 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 C17orf82Q86X59 251 aaPredicted RBP2.99□□□□□ -1.93
TDP1-207ENST00000553617 HPS6Q86YV9 775 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ZNF440Q8IYI8 595 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 UBL4BQ8N7F7 174 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 LFNGQ8NES3 379 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 ATP6V1C2Q8NEY4 427 aa2.99□□□□□ -1.93
TDP1-207ENST00000553617 NOXO1Q8NFA2 376 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms