RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 HSD17B1P14061 328 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 IRF2P14316 349 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 MMP16P51512 607 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 HIST1H3AP68431 136 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 HIST2H3PS2Q5TEC6 136 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 CORO6Q6QEF8 472 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 BTNL3Q6UXE8 466 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 HIST2H3AQ71DI3 136 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 OR6V1Q8N148 313 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 FAM86B1Q8N7N1 296 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 DEFB108BQ8NET1 73 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 OR52L1Q8NGH7 329 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 C22orf15Q8WYQ4 148 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 PLEKHA8Q96JA3 519 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 MEGF10Q96KG7 1140 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 SIGLEC11Q96RL6 698 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 ATF6BQ99941 703 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 MMP26Q9NRE1 261 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 MIOXQ9UGB7 285 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 NUP50Q9UKX7 468 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 LRCH1Q9Y2L9 728 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 INSIG2Q9Y5U4 225 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 TANC2Q9HCD6 1990 aa10.73□□□□□ -0.69
LINC00643-202ENST00000553426 IGLV1-36A0A0B4J1U3 117 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 CEACAM18A8MTB9 384 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 A8MXK9 166 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 IQCF6A8MYZ5 107 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 DCTN6O00399 190 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 ATP8B1O43520 1251 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 KRT36O76013 467 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 GPANK1O95872 356 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 LCATP04180 440 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 RPS2P15880 293 aaKnown RBP10.72□□□□□ -0.69
LINC00643-202ENST00000553426 HIST1H1CP16403 213 aaKnown RBP10.72□□□□□ -0.69
LINC00643-202ENST00000553426 ZNF823P16415 610 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 ERFP50548 548 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 RAD23AP54725 363 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 TPTEP56180 551 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 RPL13AP3Q6NVV1 102 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 PGAP1Q75T13 922 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 NLRC3Q7RTR2 1065 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 ZBTB46Q86UZ6 589 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 PGAM4Q8N0Y7 254 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 LINC00471Q8N535 108 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 BHLHE23Q8NDY6 225 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 SLC26A10Q8NG04 563 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 GNPDA2Q8TDQ7 276 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 SPRYD4Q8WW59 207 aaPredicted RBP10.72□□□□□ -0.69
LINC00643-202ENST00000553426 CDRT15Q96T59 188 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 SLC30A2Q9BRI3 323 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 FUZQ9BT04 418 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 SSBP3Q9BWW4 388 aaPredicted RBP10.72□□□□□ -0.69
LINC00643-202ENST00000553426 ZMAT3Q9HA38 289 aaKnown RBP10.72□□□□□ -0.69
LINC00643-202ENST00000553426 KCNG2Q9UJ96 466 aa10.72□□□□□ -0.69
LINC00643-202ENST00000553426 NOP16Q9Y3C1 178 aaKnown RBP10.72□□□□□ -0.69
LINC00643-202ENST00000553426 F5H0A9 414 aaPredicted RBP10.71□□□□□ -0.69
LINC00643-202ENST00000553426 TRAPPC2LH3BP13 241 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SNX3O60493 162 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 CYB5R3P00387 301 aaPredicted RBP10.71□□□□□ -0.69
LINC00643-202ENST00000553426 FSHBP01225 129 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SEMG1P04279 462 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 ZNF12P17014 697 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 RRM2P31350 389 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SEC61A1P61619 476 aaKnown RBP10.71□□□□□ -0.69
LINC00643-202ENST00000553426 GNB2P62879 340 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 MXRA7P84157 204 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 TRAP1Q12931 704 aaKnown RBP10.71□□□□□ -0.69
LINC00643-202ENST00000553426 TSPAN31Q12999 210 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 ZNF181Q2M3W8 571 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SPATS1Q496A3 300 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SLC18B1Q6NT16 456 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 C16orf89Q6UX73 402 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 LRRN1Q6UXK5 716 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 MOGAT3Q86VF5 341 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 LINC00346Q8IVM7 164 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SDR9C7Q8NEX9 313 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 PROKR2Q8NFJ6 384 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 OR52E2Q8NGJ4 325 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 OR11L1Q8NGX0 322 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SGMS2Q8NHU3 365 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 ZNF420Q8TAQ5 688 aaPredicted RBP10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SPTSSAQ969W0 71 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 ERGIC1Q969X5 290 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 C1QTNF5Q9BXJ0 243 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 PLA2G12AQ9BZM1 189 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 MS4A7Q9GZW8 240 aaPredicted RBP10.71□□□□□ -0.69
LINC00643-202ENST00000553426 SLC22A4Q9H015 551 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 WDR76Q9H967 626 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 IL1RAPQ9NPH3 570 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 CYB5R1Q9UHQ9 305 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 TENM1Q9UKZ4 2725 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 PPIAL4AQ9Y536 164 aa10.71□□□□□ -0.69
LINC00643-202ENST00000553426 OR6C68A6NDL8 312 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 F5H5P2 479 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 H0YL77 283 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 ARPC2O15144 300 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 FSTL3O95633 263 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 WNT2P09544 360 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 ACSM4P0C7M7 580 aa10.7□□□□□ -0.7
LINC00643-202ENST00000553426 MSX2P35548 267 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms