RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 FBP2O00757 339 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 UBDO15205 165 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L2P0CJ85 424 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L3P0CJ86 424 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L4P0CJ87 422 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L5P0CJ88 424 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L6P0CJ89 424 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L7P0CJ90 424 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 VSIG10L2P0DP72 767 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 CD28P10747 220 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 GPX2P18283 190 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 CD247P20963 164 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 FPR3P25089 353 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 RPL27P61353 136 aaKnown RBP10.58□□□□□ -0.72
VPS29-211ENST00000553128 ELF3P78545 371 aaPredicted RBP10.58□□□□□ -0.72
VPS29-211ENST00000553128 POU4F2Q12837 409 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 KLRD1Q13241 179 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 ALG10Q5BKT4 473 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4L9Q6RFH8 374 aaPredicted RBP10.58□□□□□ -0.72
VPS29-211ENST00000553128 FUNDC1Q8IVP5 155 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 KIRREL3Q8IZU9 778 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 ZBTB9Q96C00 473 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 R3HDM4Q96D70 268 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 ECSITQ9BQ95 431 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 PCDHAC1Q9H158 963 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 SIRT7Q9NRC8 400 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 DUX4Q9UBX2 424 aa10.58□□□□□ -0.72
VPS29-211ENST00000553128 WI2-2373I1.2A0A1W2PRP0 233 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 GMNCA6NCL1 334 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 LGALS8O00214 317 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 DVL1O14640 695 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 GYPAP02724 150 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 NR2C1P13056 603 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 GUCA1AP43080 201 aaPredicted RBP10.57□□□□□ -0.72
VPS29-211ENST00000553128 KIR2DS4P43632 304 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 SCRN3Q0VDG4 424 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 CDONQ4KMG0 1287 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 CCDC92Q53HC0 331 aaPredicted RBP10.57□□□□□ -0.72
VPS29-211ENST00000553128 DEFB121Q5J5C9 76 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 CALHM3Q86XJ0 350 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 PCYOX1LQ8NBM8 494 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 C17orf50Q8WW18 174 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 LIPHQ8WWY8 451 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 COG8Q96MW5 612 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 ROPN1BQ9BZX4 212 aaPredicted RBP10.57□□□□□ -0.72
VPS29-211ENST00000553128 CNTD2Q9H8S5 307 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 ROPN1Q9HAT0 212 aaPredicted RBP10.57□□□□□ -0.72
VPS29-211ENST00000553128 TMEM100Q9NV29 134 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 ONECUT1Q9UBC0 465 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 RPUSD1Q9UJJ7 312 aaKnown RBP10.57□□□□□ -0.72
VPS29-211ENST00000553128 GMEB1Q9Y692 573 aa10.57□□□□□ -0.72
VPS29-211ENST00000553128 LYSTQ99698 3801 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 H3BUX3 64 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 NPFFO15130 113 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 PPP1R3DO95685 299 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 TNFRSF1BP20333 461 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 PAX6P26367 422 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 CD200P41217 278 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 CRYBA2P53672 197 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 KRTAP10-11P60412 298 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 CTXN1P60606 82 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 SELPLGQ14242 412 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 OR8B8Q15620 311 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 LY6EQ16553 131 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 LRRC75AQ8NAA5 344 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 OR4S1Q8NGB4 309 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 OR11L1Q8NGX0 322 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 OR1F12Q8NHA8 337 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 LRRC8CQ8TDW0 803 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 TMEM239Q8WW34 195 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 ST8SIA4Q92187 359 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 ANP32BQ92688 251 aaKnown RBP10.56□□□□□ -0.72
VPS29-211ENST00000553128 TAMM41Q96BW9 452 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 RASD2Q96D21 266 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 PAIP2Q9BPZ3 127 aaKnown RBP10.56□□□□□ -0.72
VPS29-211ENST00000553128 CPPED1Q9BRF8 314 aaPredicted RBP10.56□□□□□ -0.72
VPS29-211ENST00000553128 RNF7Q9UBF6 113 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 HIF3AQ9Y2N7 669 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 KPTNQ9Y664 436 aa10.56□□□□□ -0.72
VPS29-211ENST00000553128 A0A1B0GVI7 797 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 RER1O15258 196 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 SHOX2O60902 331 aaPredicted RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 SNNO75324 88 aaPredicted RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 PPIBP23284 216 aaKnown RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 SAA4P35542 130 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 FHL1Q13642 323 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 HABP2Q14520 560 aaPredicted RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 INTS11Q5TA45 600 aaKnown RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 FAM90A1Q86YD7 464 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 MICU2Q8IYU8 434 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 Q8N7P7 452 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 CELF2-AS1Q8N7Q2 184 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 LY6G5BQ8NDX9 201 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 OR5R1Q8NH85 324 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 AENQ8WTP8 325 aaKnown RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 RORBQ92753 470 aa10.55□□□□□ -0.72
VPS29-211ENST00000553128 HUWE1Q7Z6Z7 4374 aaKnown RBP10.55□□□□□ -0.72
VPS29-211ENST00000553128 TENM2Q9NT68 2774 aa10.54□□□□□ -0.72
VPS29-211ENST00000553128 IGHV3OR15-7A0A075B7D8 119 aa10.54□□□□□ -0.72
VPS29-211ENST00000553128 MEIOCA2RUB1 952 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms