RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 MEPCEQ7L2J0 689 aaKnown RBP12.08□□□□□ -0.48
PTCH1-226ENST00000553011 SHFQ7M4L6 423 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 C1orf174Q8IYL3 243 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 FAM81AQ8TBF8 368 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 GTF3AQ92664 365 aaKnown RBP12.08□□□□□ -0.48
PTCH1-226ENST00000553011 UBE2FQ969M7 185 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 HRASLS5Q96KN8 279 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 COPS4Q9BT78 406 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 FBXO9Q9UK97 447 aaPredicted RBP12.08□□□□□ -0.48
PTCH1-226ENST00000553011 KLHDC2Q9Y2U9 406 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 YLPM1P49750 1951 aaKnown RBP12.08□□□□□ -0.48
PTCH1-226ENST00000553011 ABCA1O95477 2261 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF878C9JN71 531 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 M0R135 149 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 F12P00748 615 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-226ENST00000553011 ANOS1P23352 680 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 HCCSP53701 268 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 TPTEP56180 551 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 CDC42P60953 191 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 ELF3P78545 371 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-226ENST00000553011 PSG7Q13046 419 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 TAF13Q15543 124 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 LRRC36Q1X8D7 754 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 COLCA1Q6ZS62 124 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF525Q8N782 197 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 OTOSQ8NHW6 89 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 RNF133Q8WVZ7 376 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 SPTSSAQ969W0 71 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 APOBEC3DQ96AK3 386 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF799Q96GE5 643 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 C1QTNF5Q9BXJ0 243 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 RAB1BQ9H0U4 201 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 SLCO1C1Q9NYB5 712 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 PTTG3PQ9NZH4 202 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 DNAJC27Q9NZQ0 273 aa12.07□□□□□ -0.48
PTCH1-226ENST00000553011 H2AFY2Q9P0M6 372 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF469Q96JG9 3925 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-226ENST00000553011 C5orf63A6NC05 138 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 H3BSA7 217 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 J3QW42 95 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 LCATP04180 440 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 PEX2P28328 305 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 OTX1P32242 354 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-226ENST00000553011 SLC6A9P48067 706 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 TNK1Q13470 666 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 HLXQ14774 488 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-226ENST00000553011 DNM1P46Q6ZS02 220 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 SLC16A9Q7RTY1 509 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 GID4Q8IVV7 300 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 GALNT4Q8N4A0 578 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF454Q8N9F8 522 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 OR8J1Q8NGP2 316 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 THEM6Q8WUY1 208 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 SNX33Q8WV41 574 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 CMBLQ96DG6 245 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF582Q96NG8 517 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-226ENST00000553011 KCNJ15Q99712 375 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 TMUB1Q9BVT8 246 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 YIPF3Q9GZM5 350 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 MS4A5Q9H3V2 200 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 IMPAD1Q9NX62 359 aa12.06□□□□□ -0.48
PTCH1-226ENST00000553011 ZSCAN5BA6NJL1 495 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 SLC22A31A6NKX4 558 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 H7C1Q1 480 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 DLGAP1O14490 977 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 TIMM8AO60220 97 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-226ENST00000553011 LYNP07948 512 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 SLC2A1P11166 492 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 ALOX5APP20292 161 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 TUBG1P23258 451 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 OPRL1P41146 370 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 SLC15A1P46059 708 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 MMP15P51511 669 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 PRSS12P56730 875 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 GRB2P62993 217 aaKnown RBP12.05□□□□□ -0.48
PTCH1-226ENST00000553011 GGTLC2Q14390 218 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 DRAM2Q6UX65 266 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 FBXW12Q6X9E4 464 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 CIARTQ8N365 385 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-226ENST00000553011 ZNF283Q8N7M2 679 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 OR5L1Q8NGL2 311 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 COG8Q96MW5 612 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 CNN2Q99439 309 aaKnown RBP12.05□□□□□ -0.48
PTCH1-226ENST00000553011 TUBG2Q9NRH3 451 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 NKX1-2Q9UD57 310 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-226ENST00000553011 AASSQ9UDR5 926 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 GPR160Q9UJ42 338 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 PURGQ9UJV8 347 aaKnown RBP12.05□□□□□ -0.48
PTCH1-226ENST00000553011 COPS3Q9UNS2 423 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 N6AMT1Q9Y5N5 214 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 GMPPBQ9Y5P6 360 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 DYSFO75923 2080 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 TANC2Q9HCD6 1990 aa12.05□□□□□ -0.48
PTCH1-226ENST00000553011 IGHV4-30-2A0A087WSY4 118 aa12.04□□□□□ -0.48
PTCH1-226ENST00000553011 C17orf100A8MU93 164 aa12.04□□□□□ -0.48
PTCH1-226ENST00000553011 PRR32B1ATL7 298 aa12.04□□□□□ -0.48
PTCH1-226ENST00000553011 NCR1O76036 304 aa12.04□□□□□ -0.48
PTCH1-226ENST00000553011 HPXP02790 462 aa12.04□□□□□ -0.48
PTCH1-226ENST00000553011 ERCC1P07992 297 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-226ENST00000553011 H2BFMP0C1H6 154 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms