RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAB40AQ8WXH6 277 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SMPDL3BQ92485 455 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 FBXO17Q96EF6 278 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 C14orf79Q96F83 325 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SAMD8Q96LT4 415 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 TMPRSS5Q9H3S3 457 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 OPA3Q9H6K4 179 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 MED20Q9H944 212 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZCCHC3Q9NUD5 404 aaKnown RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 COMMD9Q9P000 198 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 MOKQ9UQ07 419 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 A0A1B0GV90 55 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OR5H14A6NHG9 310 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CPSF4LA6NMK7 179 aaKnown RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 IFITM5A6NNB3 132 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OR2AT4A6NND4 320 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF705EA8MWA4 302 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF879B4DU55 563 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 F5H0A9 414 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 FARS2O95363 451 aaKnown RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 NTN1O95631 604 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CD8AP01732 235 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SERPINA7P05543 415 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SLC25A4P12235 298 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PTHLHP12272 177 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CPMP14384 443 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF14P17017 642 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 AGAP20933 346 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 DPP4P27487 766 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ADH7P40394 386 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 MC3RP41968 323 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 KLRB1Q12918 225 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PON3Q15166 354 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CEBPEQ15744 281 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PCGF3Q3KNV8 242 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PLEKHN1Q494U1 663 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 BEX5Q5H9J7 111 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ACOT7LQ6ZUV0 252 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SSX9Q7RTT3 188 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OLIG3Q7RTU3 272 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 Q8NA96 180 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OR6N1Q8NGY5 312 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 STOML3Q8TAV4 291 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 DUSP19Q8WTR2 217 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ANKRD9Q96BM1 317 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SLC35G5Q96KT7 338 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 UBQLN3Q9H347 655 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM231Q9H6L2 316 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PRTFDC1Q9NRG1 225 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PLA2G3Q9NZ20 509 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ST6GALNAC2Q9UJ37 374 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SLC13A4Q9UKG4 626 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 USP9XQ93008 2570 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 A0A1W2PPE3 182 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 GGT3PA6NGU5 568 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 DBX1A6NMT0 343 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 MCIDASD6RGH6 385 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CLDN4O14493 209 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OR2T1O43869 369 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CTNSO60931 367 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 RBBP9O75884 186 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ANXA2P07355 339 aaKnown RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CYC1P08574 325 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 APEHP13798 732 aaKnown RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CDK2P24941 298 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SDHAP31040 664 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 HSD17B7P56937 341 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SLC26A5P58743 744 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 TAS2R20P59543 309 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ACTC1P68032 377 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ACTA1P68133 377 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF85Q03923 595 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 DECR1Q16698 335 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 NKAPLQ5M9Q1 402 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 LY6G6FQ5SQ64 297 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 C11orf87Q6NUJ2 197 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 IL34Q6ZMJ4 242 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 NKAIN4Q8IVV8 208 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 GLB1L2Q8IW92 636 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 NRMQ8IXM6 262 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF595Q8IYB9 648 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 NFAM1Q8NET5 270 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 NUP43Q8NFH3 380 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 STEAP2Q8NFT2 490 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OR4C16Q8NGL9 310 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 CCDC107Q8WV48 283 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 KISS1RQ969F8 398 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 HAVCR1Q96D42 359 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SMIM19Q96E16 107 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 C16orf58Q96GQ5 468 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 OR14A2Q96R54 314 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 LPAR4Q99677 370 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 MRI1Q9BV20 369 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 EXO5Q9H790 373 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 BCL2L10Q9HD36 194 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 MMP26Q9NRE1 261 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 PNO1Q9NRX1 252 aaKnown RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 TAS2R8Q9NYW2 309 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 C19orf25Q9UFG5 118 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF230Q9UIE0 474 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms