RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 EME1Q96AY2 570 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 TMIGD2Q96BF3 282 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 RAB39BQ96DA2 213 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 NEURL3Q96EH8 262 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 LRR1Q96L50 414 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 PPP3R2Q96LZ3 170 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 C3orf30Q96M34 536 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 OXGR1Q96P68 337 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 TRNT1Q96Q11 434 aaKnown RBP2.96□□□□□ -1.94
LIMA1-206ENST00000550611 TSPAN32Q96QS1 320 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 OR2M2Q96R28 347 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 MMP27Q9H306 513 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 DENND2DQ9H6A0 471 aaPredicted RBP2.96□□□□□ -1.94
LIMA1-206ENST00000550611 MTHFD2LQ9H903 347 aaPredicted RBP2.96□□□□□ -1.94
LIMA1-206ENST00000550611 HINT3Q9NQE9 182 aaKnown RBP2.96□□□□□ -1.94
LIMA1-206ENST00000550611 MMP26Q9NRE1 261 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 C20orf141Q9NUB4 165 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 EXD2Q9NVH0 621 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 ATAD3AQ9NVI7 634 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 KIAA1456Q9P272 454 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 SEC14L4Q9UDX3 406 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 GIMAP2Q9UG22 337 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 ZDHHC2Q9UIJ5 367 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 KLHL21Q9UJP4 597 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF346Q9UL40 294 aaKnown RBP2.96□□□□□ -1.94
LIMA1-206ENST00000550611 FZR1Q9UM11 496 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 WIPI2Q9Y4P8 454 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 PCDHGB5Q9Y5G0 923 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 INSIG2Q9Y5U4 225 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 SOX21Q9Y651 276 aaPredicted RBP2.96□□□□□ -1.94
LIMA1-206ENST00000550611 CACNG2Q9Y698 323 aa2.96□□□□□ -1.94
LIMA1-206ENST00000550611 PLECQ15149 4684 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RNF103-CHMP3A0A140T963 221 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TMEM272A0A1B0GTI8 110 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 PRSS51A0A1B0GVH4 220 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 EXOC1LA0A1B0GW35 172 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TRIM64CA6NLI5 447 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 A8MXK9 166 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MS4A18H0YCH9 400 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 LDLRAD4O15165 306 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TM9SF1O15321 606 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 GLRA3O75311 464 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 FOXH1O75593 365 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CLPXO76031 633 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MFN2O95140 757 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 NDUFA7O95182 113 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 NGFP01138 241 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 IGHV3-13P01766 116 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SERPINA5P05154 406 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CLEC3BP05452 202 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CHRNGP07510 517 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 PPIAL4GP0DN37 164 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 PNMTP11086 282 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 G6PDP11413 515 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SELEP16581 610 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF43P17038 809 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 EDN2P20800 178 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 UQCRC2P22695 453 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CXCR1P25024 350 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RAD52P43351 418 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ATP4BP51164 291 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MMP15P51511 669 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CLNS1AP54105 237 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 AQP5P55064 265 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RPS23P62266 143 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CCL8P80075 99 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 LCN2P80188 198 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 EMX2Q04743 252 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF154Q13106 437 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CASP8Q14790 479 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SYPL1Q16563 259 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 GSG1Q2KHT4 349 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MRGPRG-AS1Q2M3A8 158 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SMU1Q2TAY7 513 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TRMT5Q32P41 509 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MS4A18Q3C1V0 323 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CCDC153Q494R4 210 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TMEM255AQ5JRV8 349 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CFAP157Q5JU67 520 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MRPL2Q5T653 305 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 KPRPQ5T749 579 aaPredicted RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ATAD3BQ5T9A4 648 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SERTAD4-AS1Q5TG53 156 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 OLFML2AQ68BL7 652 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 OR4F3Q6IEY1 312 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TNFAIP8L2Q6P589 184 aaPredicted RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CFAP161Q6P656 301 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RBMS3Q6XE24 437 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 WDR88Q6ZMY6 472 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ZCCHC23Q6ZST2 131 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 C16orf62Q7Z3J2 963 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 PXKQ7Z7A4 578 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RNF130Q86XS8 419 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 C10orf107Q8IVU9 208 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF440Q8IYI8 595 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 CLIP4Q8N3C7 705 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 KIR3DL3Q8N743 410 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 C11orf65Q8NCR3 313 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 KIF18AQ8NI77 898 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF519Q8TB69 540 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms