RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SDK2Q58EX2 2172 aa4.95□□□□□ -1.62
LIMA1-203ENST00000547825 EDDM13A0A1B0GTR0 161 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 A0A1B0GUH1 482 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF726A6NNF4 738 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SULT1C2O00338 296 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 VEGFDO43915 354 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GPRIN2O60269 458 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SNAPC5O75971 98 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR4E1P0C645 316 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ICAM2P13598 275 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF44P15621 663 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CTSSP25774 331 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 RAB13P51153 203 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CSNK1G2P78368 415 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CYCSP99999 105 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TCF15Q12870 199 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SOHLH1Q5JUK2 328 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM91Q6ZNR0 172 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 HIST2H3AQ71DI3 136 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR2W3Q7Z3T1 314 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CPEB2Q7Z5Q1 589 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 LAS2Q8IYD9 372 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 BCL6BQ8N143 479 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 BATF2Q8N1L9 274 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 AVL9Q8NBF6 648 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SUMF2Q8NBJ7 301 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SUMF1Q8NBK3 374 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR1J2Q8NGS2 313 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR6N1Q8NGY5 312 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SFXN5Q8TD22 340 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PRRT1Q99946 306 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 C6orf106Q9H6K1 298 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GAREM1Q9H706 876 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 FKRPQ9H9S5 495 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SLC25A19Q9HC21 320 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PRSS16Q9NQE7 514 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PRTFDC1Q9NRG1 225 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 MED17Q9NVC6 651 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 LRFN1Q9P244 771 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SLC23A2Q9UGH3 650 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 DIDO1Q9BTC0 2240 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 A0A087WZY1 265 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SLC5A10A0PJK1 596 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SLC22A23A1A5C7 686 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM150CB9EJG8 249 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 F5H5K5 113 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TSTD3H0UI37 97 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 K7EPK0 472 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 APBB3O95704 486 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 APODP05090 189 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM225BP0DP42 221 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CEBPBP17676 345 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CXCL2P19875 107 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 G0S2P27469 103 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 HTR2CP28335 458 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SERPINF1P36955 418 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 MMP15P51511 669 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 HMGA2P52926 109 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 HERV-K104P61576 105 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 RPS16P62249 146 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ESPL1Q14674 2120 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF77Q15935 545 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ETFDHQ16134 617 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 NCMAPQ5T1S8 102 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 HIST2H3PS2Q5TEC6 136 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM225Q6GV28 225 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR52W1Q6IF63 320 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ATRAIDQ6UW56 229 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 RASGRP3Q8IV61 690 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 FAM71E2Q8N5Q1 922 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 FAM24BQ8N5W8 94 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM217Q8N7C4 229 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SEMA6DQ8NFY4 1073 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR4D10Q8NGI6 311 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR51T1Q8NGJ9 327 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR9A4Q8NGU2 314 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 OR4K15Q8NH41 348 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PBDC1Q9BVG4 233 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SUCNR1Q9BXA5 334 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CHST6Q9GZX3 395 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 BANF2Q9H503 90 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ZFP57Q9NU63 452 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 EHFQ9NZC4 300 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 MIOXQ9UGB7 285 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CDC42EP3Q9UKI2 254 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 VDAC3Q9Y277 283 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 MDC1Q14676 2089 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PHOX2AO14813 284 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CYTIPO60759 359 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GPANK1O95872 356 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 NMBP08949 121 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SPP1P10451 314 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TBXA2RP21731 343 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GABRR1P24046 479 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 NFYBP25208 207 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PTBP1P26599 531 aaKnown RBP eCLIP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 UBE2KP61086 200 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 MAT1AQ00266 395 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CDK5Q00535 292 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 TLE1Q04724 770 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms