RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NLRC3Q7RTR2 1065 aa14.1□□□□□ -0.15
CUX1-211ENST00000546411 ATG4DQ86TL0 474 aaPredicted RBP14.1□□□□□ -0.15
CUX1-211ENST00000546411 TCTE3Q8IZS6 198 aa14.1□□□□□ -0.15
CUX1-211ENST00000546411 PARP12Q9H0J9 701 aaKnown RBP14.1□□□□□ -0.15
CUX1-211ENST00000546411 PPP1R3EQ9H7J1 279 aa14.1□□□□□ -0.15
CUX1-211ENST00000546411 SLC17A2O00624 439 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 HRH1P35367 487 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.09□□□□□ -0.15
CUX1-211ENST00000546411 FAM74A1Q5RGS3 127 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 OR2AK2Q8NG84 335 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 WDR89Q96FK6 387 aaPredicted RBP14.09□□□□□ -0.15
CUX1-211ENST00000546411 SYT3Q9BQG1 590 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 MENTQ9BUN1 341 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 NXF2Q9GZY0 626 aaKnown RBP14.09□□□□□ -0.15
CUX1-211ENST00000546411 SHISA3A0PJX4 238 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 XRCC3O43542 346 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 OMGP23515 440 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 NXPH1P58417 271 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 TAS2R31P59538 309 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 HNF4GQ14541 408 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 NICN1Q9BSH3 213 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 WIF1Q9Y5W5 379 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 SLC22A23A1A5C7 686 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 HPXP02790 462 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 IL9P15248 144 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 M6PRP20645 277 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 MSX1P28360 303 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 ZNF121P58317 390 aaPredicted RBP14.09□□□□□ -0.15
CUX1-211ENST00000546411 UBE2NP61088 152 aaKnown RBP14.09□□□□□ -0.15
CUX1-211ENST00000546411 FUT7Q11130 342 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 ARL6IP1Q15041 203 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 TAF9Q16594 264 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 PHLDA2Q53GA4 152 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 NHLRC1Q6VVB1 395 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 TMUB2Q71RG4 321 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 RABEPKQ7Z6M1 372 aa14.09□□□□□ -0.15
CUX1-211ENST00000546411 ALKBH3Q96Q83 286 aaPredicted RBP14.09□□□□□ -0.15
CUX1-211ENST00000546411 MCTS1Q9ULC4 181 aaKnown RBP14.09□□□□□ -0.15
CUX1-211ENST00000546411 CXCL13O43927 109 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 PMS2P2O95744 297 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 HLA-DOBP13765 273 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 ENPP1P22413 925 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 SLC25A1P53007 311 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 TIGD3Q6B0B8 471 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 CLEC1AQ8NC01 280 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 OR51A2Q8NGJ7 313 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 MARCH1Q8TCQ1 289 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 STK35Q8TDR2 534 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 CLCC1Q96S66 551 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 SLCO1B1Q9Y6L6 691 aa14.08□□□□□ -0.15
CUX1-211ENST00000546411 PTP4A3O75365 173 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 RECKO95980 971 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 CAMLGP49069 296 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 SNRPNP63162 240 aaKnown RBP14.08□□□□□ -0.16
CUX1-211ENST00000546411 ZNF687Q8N1G0 1237 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 FOXJ3Q9UPW0 622 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 FAHP16930 419 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 ARG2P78540 354 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 MC2RQ01718 297 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 CNEP1R1Q8N9A8 125 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 METTL9Q9H1A3 318 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 SAV1Q9H4B6 383 aaPredicted RBP14.08□□□□□ -0.16
CUX1-211ENST00000546411 MRPS18AQ9NVS2 196 aaKnown RBP14.08□□□□□ -0.16
CUX1-211ENST00000546411 KLHDC2Q9Y2U9 406 aa14.08□□□□□ -0.16
CUX1-211ENST00000546411 NOSIPQ9Y314 301 aaKnown RBP14.08□□□□□ -0.16
CUX1-211ENST00000546411 SNAPC5O75971 98 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 OR4E1P0C645 316 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 RNLSQ5VYX0 342 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 GRAMD2AQ8IUY3 354 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 DUSP18Q8NEJ0 188 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ZC3H10Q96K80 434 aaKnown RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 ZNF223Q9UK11 482 aaPredicted RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 MYLKQ15746 1914 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 A0A096LPE4 126 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 A0A1W2PPZ6 126 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 SGCEO43556 437 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 EIF1BO60739 113 aaKnown RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 TPT1P13693 172 aaKnown RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 AVPR2P30518 371 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 MAML2Q8IZL2 1156 aaPredicted RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 CHAC2Q8WUX2 184 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 PIGQQ9BRB3 760 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 HAO2Q9NYQ3 351 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 NXT1Q9UKK6 140 aaKnown RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 CACNA1DQ01668 2161 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 PTPRDP23468 1912 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 TEX51A0A1B0GUA7 166 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 M0R135 149 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ANGPTL7O43827 346 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ABHD16AO95870 558 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 UBBP0CG47 229 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 SKP2Q13309 424 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 THEM4Q5T1C6 240 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 VASH2Q86V25 355 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 SECTM1Q8WVN6 248 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 SPACA9Q96E40 222 aaPredicted RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 ZNF799Q96GE5 643 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 OGG1O15527 345 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ZNF254O75437 659 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 GLSO94925 669 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms