RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 NPFFR1Q9GZQ6 430 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 OR51I1Q9H343 314 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 ARMC7Q9H6L4 198 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 MTHFD2LQ9H903 347 aaPredicted RBP3.34□□□□□ -1.87
SNHG1-220ENST00000544550 C12orf10Q9HB07 376 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 CACYBPQ9HB71 228 aaKnown RBP3.34□□□□□ -1.87
SNHG1-220ENST00000544550 KCNK9Q9NPC2 374 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 TMEM38BQ9NVV0 291 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 DCAF16Q9NXF7 216 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 ERVK-18Q9QC07 812 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 BAIAP2L1Q9UHR4 511 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 SNX12Q9UMY4 172 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 CCL27Q9Y4X3 112 aa3.34□□□□□ -1.87
SNHG1-220ENST00000544550 TET2Q6N021 2002 aaPredicted RBP3.34□□□□□ -1.88
SNHG1-220ENST00000544550 TRAV36DV7A0A075B6V5 113 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 EXOC1LA0A1B0GW35 172 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 C5orf49A4QMS7 147 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 HMX3A6NHT5 357 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 AP4M1O00189 453 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 LSM1O15116 133 aaKnown RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 ZNF500O60304 480 aaPredicted RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 RAMP3O60896 148 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 ECDO95905 644 aaPredicted RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 OPN1SWP03999 348 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 THY1P04216 161 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 ALDOBP05062 364 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 QDPRP09417 244 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CD28P10747 220 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 PRPS1L1P21108 318 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 STOMP27105 288 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 GRPRP30550 384 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 SRP9P49458 86 aaKnown RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 GDI2P50395 445 aaKnown RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 ZNF84P51523 738 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 SUMO2P61956 95 aaKnown RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 PPP1CBP62140 327 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 PUDPQ08623 228 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 GALNTL6Q49A17 601 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 LIN52Q52LA3 116 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 RFTN2Q52LD8 501 aaPredicted RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CFAP157Q5JU67 520 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 SPATA46Q5T0L3 261 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 MRPL2Q5T653 305 aaKnown RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 ATG16L1Q676U5 607 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 METAP1DQ6UB28 335 aaPredicted RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 LRRC74BQ6ZQY2 392 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 PTCHD4Q6ZW05 846 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 OLIG3Q7RTU3 272 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 PXKQ7Z7A4 578 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 IGFN1Q86VF2 1251 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CNPY4Q8N129 248 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CCNYL1Q8N7R7 359 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 NPEPL1Q8NDH3 523 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 OR6S1Q8NH40 331 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 FGFBP3Q8TAT2 258 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 ITLN1Q8WWA0 313 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 COQ8BQ96D53 544 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 PPP3R2Q96LZ3 170 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 COG8Q96MW5 612 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 TRNT1Q96Q11 434 aaKnown RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 EPYCQ99645 322 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 NAPGQ99747 312 aaPredicted RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 SH3GL3Q99963 347 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CITED2Q99967 270 aaPredicted RBP3.33□□□□□ -1.88
SNHG1-220ENST00000544550 DUSP26Q9BV47 211 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 EMC6Q9BV81 110 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CHID1Q9BWS9 393 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 CCNB1IP1Q9NPC3 277 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 GLTPQ9NZD2 209 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 MGAT4CQ9UBM8 478 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 SIGLEC9Q9Y336 463 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 MAB21L2Q9Y586 359 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 KPTNQ9Y664 436 aa3.33□□□□□ -1.88
SNHG1-220ENST00000544550 A0A087WUJ7 227 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 LINC00473A8K010 186 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 MS4A18H0YCH9 400 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 H0YIZ8 118 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 NDUFA2O43678 99 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 SLC22A3O75751 556 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 OR6A2O95222 327 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 CYB5R3P00387 301 aaPredicted RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 TK1P04183 234 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 SNRPAP09012 282 aaKnown RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 GKN3PP0CG01 181 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 ZNF26P17031 533 aaPredicted RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 KITLGP21583 273 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 RPS4Y1P22090 263 aaKnown RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 HOXD3P31249 432 aaPredicted RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 RPL4P36578 427 aaKnown RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 PSMB10P40306 273 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 WNT5AP41221 380 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 ACAA2P42765 397 aaKnown RBP3.32□□□□□ -1.88
SNHG1-220ENST00000544550 PAFAH1B1P43034 410 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 RGS6P49758 472 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 HMGA2P52926 109 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 BIDP55957 195 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 EGR4Q05215 589 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 ACSM1Q08AH1 577 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 FUT5Q11128 374 aa3.32□□□□□ -1.88
SNHG1-220ENST00000544550 PSG7Q13046 419 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms