RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RCN3Q96D15 328 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 HSH2DQ96JZ2 352 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 WACQ9BTA9 647 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 PRDM13Q9H4Q3 707 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 NRIP3Q9NQ35 241 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 TUBG2Q9NRH3 451 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 C1RLQ9NZP8 487 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 MIOXQ9UGB7 285 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 SIGLEC7Q9Y286 467 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 MMP24Q9Y5R2 645 aa12.86□□□□□ -0.35
CLSTN3-213ENST00000541953 HTR3EA5X5Y0 456 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 C5orf63A6NC05 138 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 IQCF6A8MYZ5 107 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 NME4O00746 187 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 FAM20BO75063 409 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 KHDRBS3O75525 346 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 SDHAP31040 664 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 RAD23AP54725 363 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 RAG2P55895 527 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 LSM6P62312 80 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 SEC23BQ15437 767 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 KRTAP27-1Q3LI81 207 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 ANKDD1AQ495B1 522 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 CFAP77Q6ZQR2 320 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 SLC15A3Q8IY34 581 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 OR8B3Q8NGG8 313 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 OR8B2Q96RD0 313 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 TBX15Q96SF7 602 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 NMNAT1Q9HAN9 279 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 UFSP2Q9NUQ7 469 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 ARMCX1Q9P291 453 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 TMCC3Q9ULS5 477 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 IER3IP1Q9Y5U9 82 aa12.85□□□□□ -0.35
CLSTN3-213ENST00000541953 IGLV1-36A0A0B4J1U3 117 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 BBIP1A8MTZ0 92 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 CXCR6O00574 342 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 MELTFP08582 738 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 MMP9P14780 707 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 NCK1P16333 377 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 OMPP47874 163 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 SRP9P49458 86 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 LIPEQ05469 1076 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 GK2Q14410 553 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 KCNMB1Q16558 191 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 ZNF181Q2M3W8 571 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 IFI44LQ53G44 452 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 Q6YL49 198 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 COLCA1Q6ZS62 124 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 CBLL1Q75N03 491 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 LINC00346Q8IVM7 164 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 RNF113BQ8IZP6 322 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 APOBEC3DQ96AK3 386 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 ZNF582Q96NG8 517 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 GPX7Q96SL4 187 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 CITED1Q99966 193 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 SIKE1Q9BRV8 207 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 PCGF1Q9BSM1 259 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 SMURF1Q9HCE7 757 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 CLN8Q9UBY8 286 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 RPS6KA6Q9UK32 745 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 DNAH3Q8TD57 4116 aa12.84□□□□□ -0.35
CLSTN3-213ENST00000541953 TRBV4-1A0A0J9YWV2 114 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 HMGB1P1B2RPK0 211 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 AHCYL1O43865 530 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 DIRAS1O95057 198 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 NDUFB2O95178 105 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 SERPINA1P01009 418 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 KNG1P01042 644 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 NPPAP01160 153 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 PSKH1P11801 424 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 FPR3P25089 353 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 CFHR2P36980 270 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 PSMB10P40306 273 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 GATA4P43694 442 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 FGFRL1Q8N441 504 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 FAM86B1Q8N7N1 296 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 LZICQ8WZA0 190 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 ZDHHC16Q969W1 377 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 RSRC1Q96IZ7 334 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 COG8Q96MW5 612 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 COQ7Q99807 217 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 FN3KQ9H479 309 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 PNRC2Q9NPJ4 139 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 FGFR1OP2Q9NVK5 253 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 ATPIF1Q9UII2 106 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 POLR1DQ9Y2S0 133 aa12.83□□□□□ -0.36
CLSTN3-213ENST00000541953 J3QW42 95 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 IFNL4K9M1U5 179 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 PHYHO14832 338 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 PPP1R3DO95685 299 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 ACSM4P0C7M7 580 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 CENPAP49450 140 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 RGS6P49758 472 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 GSK3BP49841 420 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 ELF3P78545 371 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 COX10Q12887 443 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 OLFML2AQ68BL7 652 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 SFRP4Q6FHJ7 346 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 SLC18B1Q6NT16 456 aa12.82□□□□□ -0.36
CLSTN3-213ENST00000541953 DCDC5Q6ZRR9 648 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms