RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CRLF2Q9HC73 371 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 PTPRZ1P23471 2315 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ISG15P05161 165 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 DBHP09172 617 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 UBCP0CG48 685 aaKnown RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 IGFBP3P17936 291 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 GIFP27352 417 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 SLC6A9P48067 706 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ENDOGQ14249 297 aaKnown RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 TMEM244Q5VVB8 128 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 TMPRSS7Q7RTY8 843 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 DUSP18Q8NEJ0 188 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 OR1J2Q8NGS2 313 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 SMIM4Q8WVI0 70 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 NABP1Q96AH0 204 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ADGRG7Q96K78 797 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 TTTY12Q9BZ98 90 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 NELFAQ9H3P2 528 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 FOXD3Q9UJU5 478 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 CSAG2Q9Y5P2 127 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ALG5Q9Y673 324 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 SPENQ96T58 3664 aaKnown RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 MUC6Q6W4X9 2439 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF716A6NP11 495 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 NKX2-8O15522 239 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 SLC6A1P30531 599 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 NR4A2P43354 598 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 TAS2R20P59543 309 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 PSMA6P60900 246 aaKnown RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 PLGLB1Q02325 96 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 POU4F3Q15319 338 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 TBRG1Q3YBR2 411 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 TMEM255AQ5JRV8 349 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 JMJD6Q6NYC1 403 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 GALNT16Q8N428 558 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 OR13C9Q8NGT0 318 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF275Q9NSD4 429 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 NUDT15Q9NV35 164 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 ABI3Q9P2A4 366 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 RCE1Q9Y256 329 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 TMEM272A0A1B0GTI8 110 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 SLC17A2O00624 439 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 HTR2CP28335 458 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 SFRP4Q6FHJ7 346 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 AAED1Q7RTV5 226 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 OR52N4Q8NGI2 321 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 OR6F1Q8NGZ6 308 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 CHAC2Q8WUX2 184 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 FBXO17Q96EF6 278 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 ZC3HAV1LQ96H79 300 aaKnown RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 OR2B2Q9GZK3 357 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 ZMAT3Q9HA38 289 aaKnown RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 BEX1Q9HBH7 125 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 GPR84Q9NQS5 396 aa12.8□□□□□ -0.36
CLIP1-216ENST00000541410 CDV3Q9UKY7 258 aaKnown RBP12.8□□□□□ -0.36
CLIP1-216ENST00000541410 A0A1B0GTI1 187 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 CTAG2O75638 210 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 B4GALT1P15291 398 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 PRSS12P56730 875 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 CD83Q01151 205 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 GUCA2AQ02747 115 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 PLA1AQ53H76 456 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 C10orf128Q5T292 105 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 GLT8D1Q68CQ7 371 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 DTX1Q86Y01 620 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 TMEM251Q8N6I4 163 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 OR4D6Q8NGJ1 314 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 ITFG2Q969R8 447 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 ATG5Q9H1Y0 275 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 PTPRBP23467 1997 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 INMT-MINDY4F8WBC2 141 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 ZNHIT1O43257 154 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 GMDSO60547 372 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 KCNMB1Q16558 191 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 ATAD3CQ5T2N8 411 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 GLRX5Q86SX6 157 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 C20orf196Q8IYI0 205 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 PRSS33Q8NF86 280 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 RAB40AQ8WXH6 277 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 SLC25A28Q96A46 364 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 FER1L6-AS2Q96M78 137 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 FYTTD1Q96QD9 318 aaKnown RBP12.79□□□□□ -0.36
CLIP1-216ENST00000541410 MARVELD1Q9BSK0 173 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 NKIRAS2Q9NYR9 191 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 PLEK2Q9NYT0 353 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 ETV7Q9Y603 341 aa12.79□□□□□ -0.36
CLIP1-216ENST00000541410 CEP250Q9BV73 2442 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 TRAV18A0A075B6X5 111 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 A0A1B0GVI7 797 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 ARSBP15848 533 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 DCTDP32321 178 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 MEOX1P50221 254 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 SNTB2Q13425 540 aaKnown RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 KLF9Q13886 244 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 C9orf135Q5VTT2 229 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 FAM166AQ6J272 317 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 FCAMRQ8WWV6 532 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 FAM46BQ96A09 425 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 RNF170Q96K19 258 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms