RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM157AC9JC47 383 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 CLDN25C9JDP6 229 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 GNGT2O14610 69 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 FKBP6O75344 327 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 GYPBP06028 91 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 ACSM4P0C7M7 580 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 CLUP10909 449 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 RAC2P15153 192 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 HOXB6P17509 224 aaKnown RBP12.54□□□□□ -0.4
USP28-204ENST00000537642 SPI1P17947 270 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 SLC25A1P53007 311 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 LMO4P61968 165 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 TNFAIP6P98066 277 aaPredicted RBP12.54□□□□□ -0.4
USP28-204ENST00000537642 MVKQ03426 396 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 ECH1Q13011 328 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 HNRNPA0Q13151 305 aaKnown RBP12.54□□□□□ -0.4
USP28-204ENST00000537642 HFEQ30201 348 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 FBXW12Q6X9E4 464 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 COLCA1Q6ZS62 124 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 IL17RELQ6ZVW7 336 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 HS3ST5Q8IZT8 346 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 IQCF1Q8N6M8 205 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 PAPD5Q8NDF8 572 aaKnown RBP12.54□□□□□ -0.4
USP28-204ENST00000537642 OR5L1Q8NGL2 311 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 OR10S1Q8NGN2 331 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 CCL17Q92583 94 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 SLCO4A1Q96BD0 722 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 C1QTNF5Q9BXJ0 243 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 WDR76Q9H967 626 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 CMC2Q9NRP2 79 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 PDP1Q9P0J1 537 aaPredicted RBP12.54□□□□□ -0.4
USP28-204ENST00000537642 WIPI2Q9Y4P8 454 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 COMMD3-BMI1R4GMX3 469 aa12.54□□□□□ -0.4
USP28-204ENST00000537642 F5H5K5 113 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 IFNGP01579 166 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 GRK5P34947 590 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 CBX1P83916 185 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 CR1LQ2VPA4 569 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 OR2T2Q6IF00 324 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 NAA40Q86UY6 237 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 OR5AS1Q8N127 324 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 ZNF511Q8NB15 262 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 OR2Z1Q8NG97 314 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 TEX47Q8TBZ9 253 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 YY1AP1Q9H869 796 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 ATRQ13535 2644 aa12.53□□□□□ -0.4
USP28-204ENST00000537642 RIIAD1A6NNX1 92 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 B4DSR2 109 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 H3BN98 237 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 E2F6O75461 281 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 ZNF3P17036 446 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 PRKACGP22612 351 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 FMO3P31513 532 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 RBMXP38159 391 aaKnown RBP12.52□□□□□ -0.41
USP28-204ENST00000537642 ENTPD1P49961 510 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 DVL1P1P54792 670 aaPredicted RBP12.52□□□□□ -0.41
USP28-204ENST00000537642 PCK2Q16822 640 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 LINC01590Q5TEZ4 76 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 ACSM5Q6NUN0 579 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 MDFIQ99750 246 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 HCAR1Q9BXC0 346 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 MED20Q9H944 212 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 DDX28Q9NUL7 540 aaKnown RBP12.52□□□□□ -0.41
USP28-204ENST00000537642 DCAF16Q9NXF7 216 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 DNAJB9Q9UBS3 223 aa12.52□□□□□ -0.41
USP28-204ENST00000537642 FAM183AA6NL82 134 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 IQCF6A8MYZ5 107 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 M0R135 149 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 IFNA2P01563 188 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 LCATP04180 440 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 SPARCP09486 303 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 ANOS1P23352 680 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 TNFSF4P23510 183 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 POU1F1P28069 291 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 TPTEP56180 551 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 PRSS12P56730 875 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 TEX30Q5JUR7 227 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 SLC27A4Q6P1M0 643 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 DCXRQ7Z4W1 244 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 OR8G5Q8NG78 346 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 OR6K6Q8NGW6 343 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 ITLN1Q8WWA0 313 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 RAB1CQ92928 201 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 ZNF799Q96GE5 643 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 TIMD4Q96H15 378 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 ZNF665Q9H7R5 613 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 NTN4Q9HB63 628 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 LPAR2Q9HBW0 351 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 IL19Q9UHD0 177 aa12.51□□□□□ -0.41
USP28-204ENST00000537642 TMEFF2Q9UIK5 374 aaPredicted RBP12.51□□□□□ -0.41
USP28-204ENST00000537642 FBN1P35555 2871 aaKnown RBP12.5□□□□□ -0.41
USP28-204ENST00000537642 ZNF593O00488 134 aaPredicted RBP12.5□□□□□ -0.41
USP28-204ENST00000537642 DEAF1O75398 565 aaPredicted RBP12.5□□□□□ -0.41
USP28-204ENST00000537642 TIPRLO75663 272 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 MSMBP08118 114 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 OSMP13725 252 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 SRD5A1P18405 259 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 HNF1AP20823 631 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 OTX1P32242 354 aaPredicted RBP12.5□□□□□ -0.41
USP28-204ENST00000537642 SLC3A1Q07837 685 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms