RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NHLRC3Q5JS37 347 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 C11orf71Q6IPW1 123 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 TMUB2Q71RG4 321 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 KIAA1328Q86T90 577 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 TMEM17Q86X19 198 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 TRAPPC5Q8IUR0 188 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 CDKL3Q8IVW4 592 aaPredicted RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 C12orf56Q8IXR9 622 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 TMEM156Q8N614 296 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 ZNF671Q8TAW3 534 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 DNAJC19Q96DA6 116 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 C12orf66Q96MD2 445 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 C9orf85Q96MD7 179 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 ZNF285Q96NJ3 590 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 CYTH2Q99418 400 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 BPESC1Q9GZL8 116 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 UGT1A8Q9HAW9 530 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 ELOVL3Q9HB03 270 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 PDFQ9HBH1 243 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 MYOZ1Q9NP98 299 aaPredicted RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 MRPL39Q9NYK5 338 aaKnown RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 RNF14Q9UBS8 474 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 PPIL1Q9Y3C6 166 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 SPACA6W5XKT8 324 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 EXPH5Q8NEV8 1989 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 FAT2Q9NYQ8 4349 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 A0A0G2JMM0 328 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 A0A1W2PPB8 328 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 WI2-2373I1.2A0A1W2PRP0 233 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 A0A1W2PRS3 328 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 KIR3DP1A8MWS1 328 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 GOLGA8MH3BSY2 632 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 SRPX2O60687 465 aaPredicted RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 GALR3O60755 368 aaPredicted RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 CLPXO76031 633 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ALOX5P09917 674 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 RBMY1A1P0DJD3 496 aaKnown RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 UGT2B7P16662 529 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 SDC1P18827 310 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 CNR1P21554 472 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 SLC26A3P40879 764 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 BDKRB1P46663 353 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 PLA2G16P53816 162 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 RPL8P62917 257 aaKnown RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 KCNJ2P63252 427 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 BAMBIQ13145 260 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 DPYSL3Q14195 570 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ABRAXAS2Q15018 415 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 LTB4RQ15722 352 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 PARP15Q460N3 678 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 NCMAPQ5T1S8 102 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 LGSNQ5TDP6 509 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 PDPK2PQ6A1A2 396 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 PVRIGQ6DKI7 326 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 RWDD4Q6NW29 188 aaKnown RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 FAHD2BQ6P2I3 314 aaPredicted RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 SCIMPQ6UWF3 145 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ZNF679Q8IYX0 411 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 LINC01561Q8N1V8 128 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ZCCHC7Q8N3Z6 543 aaKnown RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 SIGLECL1Q8N7X8 197 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ANKFN1Q8N957 763 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 OR6T1Q8NGN1 323 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ITLN1Q8WWA0 313 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 CTNNBL1Q8WYA6 563 aaPredicted RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 FAHD2AQ96GK7 314 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 CYYR1Q96J86 154 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 PSKH2Q96QS6 385 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 C11orf70Q9BRQ4 267 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 CBLN4Q9NTU7 201 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 QPCTLQ9NXS2 382 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 AIPL1Q9NZN9 384 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 GNG12Q9UBI6 72 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 GLS2Q9UI32 602 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 ZNF107Q9UII5 783 aaPredicted RBP2.83□□□□□ -1.96
CD44-235ENST00000532339 GMPPBQ9Y5P6 360 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 HEBP2Q9Y5Z4 205 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 VPS13DQ5THJ4 4388 aa2.83□□□□□ -1.96
CD44-235ENST00000532339 MYCBP2O75592 4640 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 FAT4Q6V0I7 4981 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 A0A1W2PNV4 684 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 TRIM64CA6NLI5 447 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 UGT1A9O60656 530 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SNNO75324 88 aaPredicted RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 POP7O75817 140 aaKnown RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 LY6HO94772 140 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 CTDNEP1O95476 244 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 CRHP06850 196 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 MSMBP08118 114 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 PAEPP09466 180 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 PGCP20142 388 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 PTNP21246 168 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 HMGCLP35914 325 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 ALDH3B2P48448 385 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SPINT3P49223 89 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 YWHAEP62258 255 aaKnown RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 IL18R1Q13478 541 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SLC9A3R2Q15599 337 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 NSDHLQ15738 373 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SYPL1Q16563 259 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms