RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 KLK13Q9UKR3 277 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 SHISA8B8ZZ34 492 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 RAB27BO00194 218 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 ONECUT2O95948 504 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 IGHG1P01857 330 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 ERCC1P07992 297 aaPredicted RBP18.89■□□□□ 0.62
VPS28-205ENST00000526204 RPA2P15927 270 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 CLRN1P58418 232 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 ATPAF1Q5TC12 328 aaPredicted RBP18.89■□□□□ 0.62
VPS28-205ENST00000526204 SLC22A8Q8TCC7 542 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 NARFLQ9H6Q4 476 aa18.89■□□□□ 0.62
VPS28-205ENST00000526204 ADAMTS20P59510 1910 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 B8ZZF3 427 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 RAB3AP20336 220 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 MPZP25189 248 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 EIF1AXP47813 144 aaKnown RBP18.89■□□□□ 0.61
VPS28-205ENST00000526204 GSK3AP49840 483 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 ZMYND11Q15326 602 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 FAM69BQ5VUD6 431 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 LPCAT3Q6P1A2 487 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 POC1BQ8TC44 478 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 ZNF224Q9NZL3 707 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 FBLN5Q9UBX5 448 aa18.89■□□□□ 0.61
VPS28-205ENST00000526204 C19orf25Q9UFG5 118 aaPredicted RBP18.89■□□□□ 0.61
VPS28-205ENST00000526204 FARSAQ9Y285 508 aaKnown RBP18.89■□□□□ 0.61
VPS28-205ENST00000526204 hCG_1807616A0A1W2PRN6 198 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 RFPL4AA6NLU0 287 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 RFPL4AL1F8VTS6 287 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 ZNF250P15622 560 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 PTGDSP41222 190 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 CLDN6P56747 220 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 FGL1Q08830 312 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 NR0B2Q15466 257 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 RNASE10Q5GAN6 216 aaKnown RBP18.88■□□□□ 0.61
VPS28-205ENST00000526204 SFRP5Q5T4F7 317 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 GSG1LQ6UXU4 331 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 NOXO1Q8NFA2 376 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 OR52N4Q8NGI2 321 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 OR10S1Q8NGN2 331 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 OR2AJ1Q8NGZ0 328 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 SLC6A7Q99884 636 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 NUDT16L1Q9BRJ7 211 aaKnown RBP18.88■□□□□ 0.61
VPS28-205ENST00000526204 SLC5A6Q9Y289 635 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 HRH3Q9Y5N1 445 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 B3GALT1Q9Y5Z6 326 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 OR2J2O76002 312 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 PGA4P0DJD7 388 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 PGA3P0DJD8 388 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 ZNF28P17035 718 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 AGTR1P30556 359 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 CXCL12P48061 93 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 QRFPP83859 136 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 SCGB2B2Q4G0G5 96 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 ZNF529Q6P280 563 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 PAQR4Q8N4S7 273 aaPredicted RBP18.88■□□□□ 0.61
VPS28-205ENST00000526204 OR10G3Q8NGC4 313 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 OR1J2Q8NGS2 313 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 NKD1Q969G9 470 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 ADAT3Q96EY9 351 aaPredicted RBP18.88■□□□□ 0.61
VPS28-205ENST00000526204 CRB3Q9BUF7 120 aa18.88■□□□□ 0.61
VPS28-205ENST00000526204 ZNF878C9JN71 531 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 FKBP2P26885 142 aaKnown RBP18.87■□□□□ 0.61
VPS28-205ENST00000526204 GK2Q14410 553 aaPredicted RBP18.87■□□□□ 0.61
VPS28-205ENST00000526204 CDNFQ49AH0 187 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 ZNF385CQ66K41 422 aaPredicted RBP18.87■□□□□ 0.61
VPS28-205ENST00000526204 TRAPPC6BQ86SZ2 158 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 FJX1Q86VR8 437 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 MFFQ9GZY8 342 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 POLR1DQ9Y2S0 133 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 KIF26BQ2KJY2 2108 aa18.87■□□□□ 0.61
VPS28-205ENST00000526204 CYC1P08574 325 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 SORDQ00796 357 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 DHRS2Q13268 280 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 LIN54Q6MZP7 749 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 GUSBP11Q6P575 273 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 STEAP2Q8NFT2 490 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 OR13C8Q8NGS7 320 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 SLC25A43Q8WUT9 341 aaPredicted RBP18.86■□□□□ 0.61
VPS28-205ENST00000526204 CLDN23Q96B33 292 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 SPSB2Q99619 263 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 SEC61A2Q9H9S3 476 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 OR14I1A6ND48 311 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 ZNF20P17024 532 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 P2RY4P51582 365 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 CXADRP78310 365 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 UNC119Q13432 240 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 LY6G6FQ5SQ64 297 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 RGS7BPQ6MZT1 257 aaPredicted RBP18.86■□□□□ 0.61
VPS28-205ENST00000526204 CFAP77Q6ZQR2 320 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 DTWD2Q8NBA8 298 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 CHST4Q8NCG5 386 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 OR2M3Q8NG83 312 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 OR6K3Q8NGY3 331 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 OR6X1Q8NH79 312 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 SLC26A1Q9H2B4 701 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 LHFPL6Q9Y693 200 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 CEP192Q8TEP8 1941 aa18.86■□□□□ 0.61
VPS28-205ENST00000526204 IGHV5-10-1A0A0J9YXX1 117 aa18.85■□□□□ 0.61
VPS28-205ENST00000526204 K7ESF4 209 aa18.85■□□□□ 0.61
VPS28-205ENST00000526204 CD8AP01732 235 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms