RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 OR11H7Q8NGC8 314 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 CAPSLQ8WWF8 208 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 SLC38A4Q969I6 547 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 ECHDC3Q96DC8 303 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 GGTLC1Q9BX51 225 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 EXOSC4Q9NPD3 245 aaKnown RBP2.13□□□□□ -2.07
CD44-215ENST00000525241 ENOPH1Q9UHY7 261 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 PITPNC1Q9UKF7 332 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 SLC17A4Q9Y2C5 497 aa2.13□□□□□ -2.07
CD44-215ENST00000525241 A0A0J9YXV3 536 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 A0A1B0GW55 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 OR2AG2A6NM03 316 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 KRBOX1C9JBD0 128 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 C9JVG2 144 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 RAD51CO43502 376 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 CIB2O75838 187 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 DUX4L2P0CJ85 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 DUX4L3P0CJ86 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 DUX4L5P0CJ88 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 DUX4L6P0CJ89 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 DUX4L7P0CJ90 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 CRISP1P54107 249 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 RPL23P62829 140 aaKnown RBP2.12□□□□□ -2.07
CD44-215ENST00000525241 SLC39A6Q13433 755 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 C1orf185Q5T7R7 199 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 ZYG11AQ6WRX3 759 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 MRPL55Q7Z7F7 128 aaKnown RBP2.12□□□□□ -2.07
CD44-215ENST00000525241 NKAIN4Q8IVV8 208 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 TMEM105Q8N8V8 129 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 SPANXA2-OT1Q8N9U9 137 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 TTLQ8NG68 377 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 APH1BQ8WW43 257 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 RSG1Q9BU20 258 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 TEKT3Q9BXF9 490 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 TMEM165Q9HC07 324 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 DUX4Q9UBX2 424 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 CBY1Q9Y3M2 126 aa2.12□□□□□ -2.07
CD44-215ENST00000525241 COL22A1Q8NFW1 1626 aaPredicted RBP2.12□□□□□ -2.07
CD44-215ENST00000525241 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.11□□□□□ -2.07
CD44-215ENST00000525241 IGHV3-72A0A0B4J1Y9 119 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 IGHV7-4-1A0A0J9YVY3 117 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 UBXN8O00124 270 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 GLSO94925 669 aaPredicted RBP2.11□□□□□ -2.07
CD44-215ENST00000525241 SNX4O95219 450 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 FTH1P02794 183 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 PBLDP30039 288 aaPredicted RBP2.11□□□□□ -2.07
CD44-215ENST00000525241 OR1E1P30953 314 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 RBM34P42696 430 aaKnown RBP2.11□□□□□ -2.07
CD44-215ENST00000525241 TRAM2Q15035 370 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 PSMD5Q16401 504 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 ARMC12Q5T9G4 340 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 MBOAT2Q6ZWT7 520 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 CBLN2Q8IUK8 224 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 LINC00304Q8N9R0 145 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 LYPD6BQ8NI32 183 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 ZNF317Q96PQ6 595 aaPredicted RBP2.11□□□□□ -2.07
CD44-215ENST00000525241 RETNQ9HD89 108 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 DENND4AQ7Z401 1863 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 DOCK8Q8NF50 2099 aa2.11□□□□□ -2.07
CD44-215ENST00000525241 GABRR3A8MPY1 467 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 H7C1H1 209 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 PLPP1O14494 284 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 CDC40O60508 579 aaKnown RBP eCLIP2.1□□□□□ -2.07
CD44-215ENST00000525241 CD37P11049 281 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 OTX1P32242 354 aaPredicted RBP2.1□□□□□ -2.07
CD44-215ENST00000525241 SRSF5Q13243 272 aaKnown RBP2.1□□□□□ -2.07
CD44-215ENST00000525241 DGCR6Q14129 220 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 ZNF266Q14584 549 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 HSP90AB3PQ58FF7 597 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 LRRC66Q68CR7 880 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 H3F3CQ6NXT2 135 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 C12orf54Q6X4T0 127 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 CALHM3Q86XJ0 350 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 FAM71AQ8IYT1 594 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 CBR4Q8N4T8 237 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 OR5K2Q8NHB8 316 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 RNF145Q96MT1 663 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 C20orf24Q9BUV8 137 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 TMEM27Q9HBJ8 222 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 MED4Q9NPJ6 270 aa2.1□□□□□ -2.07
CD44-215ENST00000525241 FHOD3Q2V2M9 1422 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 IGHV3OR16-8A0A075B7F1 116 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 SMIM26A0A096LP01 95 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 IGHV1-69DA0A0B4J2H0 117 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 OR5H1A6NKK0 313 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 LSM1O15116 133 aaKnown RBP2.09□□□□□ -2.07
CD44-215ENST00000525241 WBP4O75554 376 aaKnown RBP2.09□□□□□ -2.07
CD44-215ENST00000525241 IGHV3-11P01762 117 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 MYL2P10916 166 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 CCNG1P51959 295 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 ALKBH6Q3KRA9 238 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 TEX30Q5JUR7 227 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 FAM222AQ5U5X8 452 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 CSGALNACT2Q8N6G5 542 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 GPR26Q8NDV2 337 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 OR4C5Q8NGB2 326 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 OR10G6Q8NH81 332 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 NRBF2Q96F24 287 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 TGS1Q96RS0 853 aaKnown RBP2.09□□□□□ -2.07
CD44-215ENST00000525241 CCDC77Q9BR77 488 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms