RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CDC40O60508 579 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 KLF8O95600 359 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 PNPP00491 289 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 HMGN2P05204 90 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 MELTFP08582 738 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR2T7P0C7T2 308 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 GDI1P31150 447 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 TGM3Q08188 693 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC25A24Q6NUK1 477 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR13D1Q8NGV5 346 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR2T27Q8NH04 317 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR10AC1Q8NH08 325 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR2L2Q8NH16 312 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 AQP10Q96PS8 301 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 CDC6Q99741 560 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 SGPP1Q9BX95 441 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 NMES1Q9C002 83 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 RNF24Q9Y225 148 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 EFSO43281 561 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 TK1P04183 234 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FGF5P12034 268 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FCARP24071 287 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 IMPA1P29218 277 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 MAPK8P45983 427 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 DIO1P49895 249 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 RAB35Q15286 201 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 Q499Y3 187 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC22A6Q4U2R8 563 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 XKR4Q5GH76 650 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 LCN10Q6JVE6 187 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 GALNTL5Q7Z4T8 443 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC35E3Q7Z769 313 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 GJD3Q8N144 294 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 GVQW1Q8N7I0 195 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM106AQ96A25 262 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FAM3DQ96BQ1 224 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR11A1Q9GZK7 315 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 PDE7BQ9NP56 450 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 CREBZFQ9NS37 354 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 LUZP4Q9P127 313 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FRMPD3Q5JV73 1810 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 DOCK6Q96HP0 2047 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 LNP1A1A4G5 178 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 XKRY2A2RUG3 117 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 ELOA3DA6NLF2 546 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR4C45A6NMZ5 311 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 XKRYO14609 159 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 ABLIM3O94929 683 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 DUS4LO95620 317 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 NID1P14543 1247 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FCGR2CP31995 323 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 CX3CR1P49238 355 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 DCAF7P61962 342 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FUT5Q11128 374 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 HAGHQ16775 308 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 ELOA3BQ3SY89 546 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC39A5Q6ZMH5 540 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 SYS1Q8N2H4 156 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 ELOA3Q8NG57 546 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 OR1P1Q8NH06 330 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 MARCH1Q8TCQ1 289 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 FBXO32Q969P5 355 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 Q9N2J8 555 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 RCL1Q9Y2P8 373 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 DYRK1BQ9Y463 629 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 PLXND1Q9Y4D7 1925 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 RCBTB2O95199 551 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 RAB7AP51149 207 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 NOVA1P51513 510 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 VAMP2P63027 116 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 LBX2Q6XYB7 198 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 SMIM15Q7Z3B0 74 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF429Q86V71 674 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 C1orf87Q8N0U7 546 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR2L13Q8N349 312 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR51A4Q8NGJ6 313 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR5AK2Q8NH90 309 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 FAM213BQ8TBF2 198 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 RNASEH2CQ8TDP1 164 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 TP53RKQ96S44 253 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 PRRT1Q99946 306 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 PCDHB8Q9UN66 801 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF106Q9H2Y7 1883 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 LTBP1Q14766 1721 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 IFNA6P05013 189 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 GABRR1P24046 479 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 RPL12P30050 165 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ALDH3B1P43353 468 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 ELLP55199 621 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 RIPPLY2Q5TAB7 128 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 PRAMEF8Q5VWM4 474 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 PRAMEF7Q5VXH5 474 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 SLC16A14Q7RTX9 510 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 NUDT10Q8NFP7 164 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 SPPL3Q8TCT6 385 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 TSLPQ969D9 159 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR10C1Q96KK4 312 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 OR2J1Q9GZK6 312 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 GTF2A1LQ9UNN4 478 aa10.83□□□□□ -0.68
LIMCH1-213ENST00000511496 CCL25O15444 150 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms