RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SPIN2BQ9BPZ2 258 aa2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 PIGUQ9H490 435 aa2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 LYRM4Q9HD34 91 aa2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 ZDHHC4Q9NPG8 344 aa2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 CLN6Q9NWW5 311 aa2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 MTFP1Q9UDX5 166 aa2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 RCL1Q9Y2P8 373 aaKnown RBP2.42□□□□□ -2.02
HMGB1P28-201ENST00000507778 PALLDQ8WX93 1383 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 TMEM150BA6NC51 233 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 SYCE1LA8MT33 242 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 SUPT3HB4E1H0 165 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 NVLO15381 856 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 FCN3O75636 299 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 HPRT1P00492 218 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 IFNW1P05000 195 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 UBCP0CG48 685 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 RFC3P40938 356 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 RBM34P42696 430 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 RPS5P46782 204 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 SYNJ2BPP57105 145 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 ZNF121P58317 390 aaPredicted RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 RAD51Q06609 339 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 DGCR6Q14129 220 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 TRMT5Q32P41 509 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 Q5W150 140 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 TMEM205Q6UW68 189 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 ANGPTL8Q6UXH0 198 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 OTUD6AQ7L8S5 288 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 SNX20Q7Z614 316 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 CBLN2Q8IUK8 224 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 C8orf31Q8N9H6 132 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 OR8U1Q8NH10 309 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 RGP1Q92546 391 aaPredicted RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 PTX4Q96A99 478 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 FLYWCH2Q96CP2 140 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 RNF145Q96MT1 663 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 OPALINQ96PE5 141 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 ZNF317Q96PQ6 595 aaPredicted RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 CLSTN2Q9H4D0 955 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 MED4Q9NPJ6 270 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 MYEF2Q9P2K5 600 aaKnown RBP2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 ARHGAP21Q5T5U3 1957 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 FHOD3Q2V2M9 1422 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 SCN2AQ99250 2005 aa2.41□□□□□ -2.02
HMGB1P28-201ENST00000507778 MTCL1Q9Y4B5 1905 aaKnown RBP2.4□□□□□ -2.02
HMGB1P28-201ENST00000507778 TRAV19A0A0A6YYK7 116 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 IGHV1OR15-9A0A0B4J2B8 117 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 A0A0J9YXV3 536 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 LRCOL1A6NCL2 159 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 NCF1BA6NI72 391 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 NCF1CA8MVU1 366 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 H0YIV9 168 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 H7C1H1 209 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 DNASE2O00115 360 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 NME4O00746 187 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 BPY2O14599 106 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 BCKDKO14874 412 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNF207O43670 478 aaKnown RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 FOXH1O75593 365 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 APCSP02743 223 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 MUC1P15941 1255 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 RAB4AP20338 218 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 USF1P22415 310 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 NPY1RP25929 384 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 MAGEA1P43355 309 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 RAB7AP51149 207 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 UBE2MP61081 183 aaKnown RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 IRF8Q02556 426 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 ABCA11PQ4W5N1 156 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 BHLHA15Q7RTS1 189 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 TMCO2Q7Z6W1 182 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 APRG1Q8IVJ8 170 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 CDKL3Q8IVW4 592 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR4K5Q8NGD3 323 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 RBMXL1Q96E39 390 aaKnown RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 CALN1Q9BXU9 219 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 NCOR1P1Q9H4R4 102 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 WFDC1Q9HC57 220 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 MYOZ1Q9NP98 299 aaPredicted RBP2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 PXMP2Q9NR77 195 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLC39A1Q9NY26 324 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 OPN4Q9UHM6 478 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 RFNGQ9Y644 331 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLIT3O75094 1523 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 GAKO14976 1311 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 TTC41PQ6P2S7 1318 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 PHLPP2Q6ZVD8 1323 aa2.4□□□□□ -2.03
HMGB1P28-201ENST00000507778 A0A1W2PRD5 423 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 CASC3O15234 703 aaKnown RBP2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 REM1O75628 298 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 SLC22A5O76082 557 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 HLA-DQA1P01909 254 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 LINC00869P0C866 280 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 STAG3L3P0CL85 134 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 NBL1P41271 181 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 RPS15AP62244 130 aaKnown RBP2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 KRTAP13-3Q3SY46 172 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 SAXO2Q658L1 398 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 ADNP2Q6IQ32 1131 aa2.39□□□□□ -2.03
HMGB1P28-201ENST00000507778 HORMAD1Q86X24 394 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms