RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 IRF2P14316 349 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 ZNF823P16415 610 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 RRM2P31350 389 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 SLC6A9P48067 706 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 HMGA2P52926 109 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 TPTEP56180 551 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 LCN2P80188 198 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 ZNF620Q6ZNG0 422 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 Q6ZR03 302 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 C1orf229Q6ZS94 237 aaPredicted RBP12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 ZDHHC21Q8IVQ6 265 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 OR6V1Q8N148 313 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 FAM86B1Q8N7N1 296 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 OR2T4Q8NH00 348 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 OR4K13Q8NH42 304 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 SPTSSAQ969W0 71 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 PLEKHA8Q96JA3 519 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 NMNAT3Q96T66 252 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 PITX2Q99697 317 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 ATF6BQ99941 703 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 SLC30A2Q9BRI3 323 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 TRIM15Q9C019 465 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 GCM1Q9NP62 436 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 TMEM100Q9NV29 134 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 PTTG3PQ9NZH4 202 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 MIOXQ9UGB7 285 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 CDH10Q9Y6N8 788 aa12.16□□□□□ -0.46
HMGCS1-203ENST00000507004 SVEP1Q4LDE5 3571 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 F5H0A9 414 aaPredicted RBP12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 AVPP01185 164 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 FSHBP01225 129 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 HLA-DQA2P01906 255 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 PPIAL4GP0DN37 164 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 HIST1H1CP16403 213 aaKnown RBP12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 ZNF12P17014 697 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 MMP16P51512 607 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 BLVRAP53004 296 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 MXRA7P84157 204 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 GK3PQ14409 553 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 KRTAP27-1Q3LI81 207 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 ARMCX4Q5H9R4 360 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 OR2T2Q6IF00 324 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 SLC18B1Q6NT16 456 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 NLRC3Q7RTR2 1065 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 SLC7A6Q92536 515 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 GCDHQ92947 438 aaPredicted RBP12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 MEGF10Q96KG7 1140 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 TSSK2Q96PF2 358 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 SIGLEC11Q96RL6 698 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 POFUT1Q9H488 388 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 RPRD1BQ9NQG5 326 aaKnown RBP12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 DDX28Q9NUL7 540 aaKnown RBP12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 ACTR3BQ9P1U1 418 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 CYB5R1Q9UHQ9 305 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 BAIAP2Q9UQB8 552 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 AUP1Q9Y679 476 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 V9GYQ6 96 aa12.15□□□□□ -0.46
HMGCS1-203ENST00000507004 A0A1B0GWJ7 208 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 TMEM89A2RUT3 159 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 DCTN6O00399 190 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 DBHP09172 617 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 GATA4P43694 442 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 RAD23AP54725 363 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 MZT1Q08AG7 82 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 ZNF154Q13106 437 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 ZMYND11Q15326 602 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 KCNJ8Q15842 424 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 BTNL3Q6UXE8 466 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 LRRN1Q6UXK5 716 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 DEFB107AQ8IZN7 70 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 OR5AS1Q8N127 324 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 OR52E2Q8NGJ4 325 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 OR11L1Q8NGX0 322 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 OPA3Q9H6K4 179 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 MAGIXQ9H6Y5 334 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 IL20Q9NYY1 176 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 OPN4Q9UHM6 478 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 NUP50Q9UKX7 468 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 INSIG2Q9Y5U4 225 aa12.14□□□□□ -0.47
HMGCS1-203ENST00000507004 CEACAM18A8MTB9 384 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 F5H5K5 113 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 TNFRSF11BO00300 401 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 LCATP04180 440 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 ACSM4P0C7M7 580 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 HOXB6P17509 224 aaKnown RBP12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 GGT2P36268 569 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.13□□□□□ -0.476e-7■■□□□ 14.5
HMGCS1-203ENST00000507004 TRAP1Q12931 704 aaKnown RBP12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 MEP1BQ16820 701 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 PGBD2Q6P3X8 592 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 CORO6Q6QEF8 472 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 RASSF6Q6ZTQ3 369 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 PGAP1Q75T13 922 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 PIGWQ7Z7B1 504 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 SPERTQ8NA61 448 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 PLPP7Q8NBV4 271 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 DEFB108BQ8NET1 73 aa12.13□□□□□ -0.47
HMGCS1-203ENST00000507004 TRIM36Q9NQ86 728 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms