RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 LINC01555Q8NAE3 123 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 B3GNT7Q8NFL0 401 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 CNIH3Q8TBE1 160 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 PIH1D2Q8WWB5 315 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 HTR3CQ8WXA8 447 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 TMEM80Q96HE8 168 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 KCNA7Q96RP8 456 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 TSG101Q99816 390 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 PELOQ9BRX2 385 aaKnown RBP3.6□□□□□ -1.83
SF3B1-212ENST00000496458 TMEM121Q9BTD3 319 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 TAS2R7Q9NYW3 318 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 MYEF2Q9P2K5 600 aaKnown RBP3.6□□□□□ -1.83
SF3B1-212ENST00000496458 GALPQ9UBC7 116 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 ZNF229Q9UJW7 825 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 DDX19BQ9UMR2 479 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 GMPPBQ9Y5P6 360 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 KPTNQ9Y664 436 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 ADCY9O60503 1353 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 CARMIL3Q8ND23 1372 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 CCDC88AQ3V6T2 1871 aa3.6□□□□□ -1.83
SF3B1-212ENST00000496458 BCORQ6W2J9 1755 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 KIF13BQ9NQT8 1826 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CACNA1SQ13698 1873 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ANKRD31Q8N7Z5 1873 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 TRBV9A0A0B4J1U6 114 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 H3BQV1 296 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PFDN6O15212 129 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ZW10O43264 779 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PPIHO43447 177 aaKnown RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 AIREO43918 545 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 STX10O60499 249 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 GMDSO60547 372 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 TBL1XO60907 577 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 VAPBO95292 243 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 AHSA1O95433 338 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ETHE1O95571 254 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CRYZL1O95825 349 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CST4P01036 141 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 JCHAINP01591 159 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CD55P08174 381 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 STSP08842 583 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 TCN1P20061 433 aaPredicted RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 BCKDHBP21953 392 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 DCKP27707 260 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 GCAP28676 217 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CD40LGP29965 261 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 IFNA8P32881 189 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SLC1A2P43004 574 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SLC1A1P43005 524 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 QARSP47897 775 aaKnown RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 RPL26P61254 145 aaKnown RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ERVK-25P63136 954 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 RGS1Q08116 209 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SLAMF1Q13291 335 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PMS2P3Q13401 168 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PIGHQ14442 188 aaPredicted RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 DMC1Q14565 340 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 LIN52Q52LA3 116 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 DMRTC1Q5HYR2 192 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 REEP3Q6NUK4 255 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 TMIGD1Q6UXZ0 262 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 IL34Q6ZMJ4 242 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SLC26A11Q86WA9 606 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 LRRC6Q86X45 466 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CDKL3Q8IVW4 592 aaPredicted RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SLC35F2Q8IXU6 374 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 IFT20Q8IY31 132 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 INO80EQ8NBZ0 244 aaPredicted RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 OR52I1Q8NGK6 324 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 OR5L2Q8NGL0 311 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ZNF461Q8TAF7 563 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 UBA3Q8TBC4 463 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ENKURQ8TC29 256 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PYROXD1Q8WU10 500 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 NAT14Q8WUY8 206 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 RASSF5Q8WWW0 418 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 DNAJC9Q8WXX5 260 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 DGCR14Q96DF8 476 aaKnown RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PLEKHA8Q96JA3 519 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 ZNF514Q96K75 400 aaPredicted RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 NEUROG2Q9H2A3 272 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 OR51J1Q9H342 316 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 NANOGQ9H9S0 305 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 CD209Q9NNX6 404 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 C12orf4Q9NQ89 552 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PRSS16Q9NQE7 514 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 GIN1Q9NXP7 522 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 RBAKQ9NYW8 714 aaPredicted RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 TRMT112Q9UI30 125 aaKnown RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PSMD13Q9UNM6 376 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SCML2Q9UQR0 700 aa3.59□□□□□ -1.83
SF3B1-212ENST00000496458 AK6Q9Y3D8 172 aaKnown RBP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 PUS1Q9Y606 427 aaKnown RBP eCLIP3.59□□□□□ -1.83
SF3B1-212ENST00000496458 SCN7AQ01118 1682 aa3.59□□□□□ -1.84
SF3B1-212ENST00000496458 SLX4Q8IY92 1834 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 A0A1B0GUS0 222 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 A0A1W2PRD5 423 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 GOLGA8IPA6NC78 632 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 MIF4GDA9UHW6 222 aaKnown RBP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 M0R3G1 203 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms