RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MAMDC2Q7Z304 686 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LRRC18Q8N456 261 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 BPIFB2Q8N4F0 458 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 UBAC2Q8NBM4 344 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF417Q8TAU3 575 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF587Q96SQ5 575 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SMIM3Q9BZL3 60 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 BCL2L14Q9BZR8 327 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 VSX1Q9NZR4 365 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 URGCP-MRPS24S4R325 110 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PLXND1Q9Y4D7 1925 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SERTM1A2A2V5 107 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HMSDA8MTL9 139 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 F5H5K5 113 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CELA2AP08217 269 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SNU13P55769 128 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CLRN1P58418 232 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RNF4P78317 190 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EIF2B1Q14232 305 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SEZ6L2Q6UXD5 910 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NPSR1Q6W5P4 371 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HIST2H3AQ71DI3 136 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF101Q8IZC7 436 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KCNRGQ8N5I3 272 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPICQ8N5J4 248 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR14L1PQ8NHC6 308 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLAMF9Q96A28 289 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM41AQ96HV5 264 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF160Q9HCG1 818 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NOX4Q9NPH5 578 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WNT16Q9UBV4 365 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C19orf25Q9UFG5 118 aaPredicted RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FAM96BQ9Y3D0 163 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KPTNQ9Y664 436 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 USP34Q70CQ2 3546 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMED7-TICAM2A0A0A6YYA0 188 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NSG1A0A0A6YYJ2 146 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A1B0GV90 55 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 H0YIG0 161 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DNASE2O00115 360 aaPredicted RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNHIT1O43257 154 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NDUFS6O75380 124 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PTHLHP12272 177 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ABCD3P28288 659 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ALDH3B1P43353 468 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PABPC1L2AQ5JQF8 200 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C12orf73Q69YU5 71 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR2AJ1Q8NGZ0 328 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC39A7Q92504 469 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WNT2BQ93097 391 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF75AQ96N20 296 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DUSP23Q9BVJ7 150 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC25A19Q9HC21 320 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NRIP3Q9NQ35 241 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMED7Q9Y3B3 224 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PMS2P2O95744 297 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 IFNA2P01563 188 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPINK2P20155 84 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ELAVL1Q15717 326 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF124Q15973 351 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 STEAP1BQ6NZ63 245 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RBMS3Q6XE24 437 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 BAP18Q8IXM2 172 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM234Q8WY98 164 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FAM71F1Q96KD3 344 aaPredicted RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 INTS14Q96SY0 518 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MRI1Q9BV20 369 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 UNKLQ9H9P5 680 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CRLF2Q9HC73 371 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SRPK3Q9UPE1 567 aa9.7□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A087X0M5 115 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A1B0GX30 115 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF705FA8MVS1 300 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TGFBR3LH3BV60 316 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SURF4O15260 269 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ST8SIA5O15466 376 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TIAF1O95411 115 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF705DP0CH99 300 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF705BP0CI00 300 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PCP4P48539 62 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HMGN3Q15651 99 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DHRS13Q6UX07 377 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC46A1Q96NT5 459 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 GNRHR2Q96P88 292 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPACA5Q96QH8 159 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PARP12Q9H0J9 701 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DCAF16Q9NXF7 216 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF407Q9C0G0 2248 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ARGFXA6NJG6 315 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A8MXK9 166 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF44P15621 663 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RPS2P15880 293 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EPHA4P54764 986 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RPL18Q07020 188 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EBPQ15125 230 aaKnown RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF658BQ4V348 819 aaPredicted RBP9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SUMF2Q8NBJ7 301 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MORN4Q8NDC4 146 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PCOLCE2Q9UKZ9 415 aa9.69□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF337Q9Y3M9 751 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms