RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 RIIAD1A6NNX1 92 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 F5H5K5 113 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 H3BN98 237 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 E2F6O75461 281 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 DNAJC8O75937 253 aaPredicted RBP12.8□□□□□ -0.36
USP39-217ENST00000491659 TNFRSF1AP19438 455 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 GGT2P36268 569 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 CRMP1Q14194 572 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 HLXQ14774 488 aaPredicted RBP12.8□□□□□ -0.36
USP39-217ENST00000491659 ZSCAN26Q16670 478 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 CD300LDQ6UXZ3 194 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 FBXW12Q6X9E4 464 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 PEG10Q86TG7 708 aaKnown RBP12.8□□□□□ -0.36
USP39-217ENST00000491659 OR5AS1Q8N127 324 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 OR4Q3Q8NH05 313 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 OR51F2Q8NH61 342 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 DDOQ99489 341 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 NIPSNAP1Q9BPW8 284 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 RBM4Q9BWF3 364 aaKnown RBP12.8□□□□□ -0.36
USP39-217ENST00000491659 LPAR2Q9HBW0 351 aa12.8□□□□□ -0.36
USP39-217ENST00000491659 TMEFF2Q9UIK5 374 aaPredicted RBP12.8□□□□□ -0.36
USP39-217ENST00000491659 DYSFO75923 2080 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 ISPDA4D126 451 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 TVP23AA6NH52 213 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 FAM157AC9JC47 383 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 SURF4O15260 269 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 MSMBP08118 114 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 ACSM4P0C7M7 580 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 FMO3P31513 532 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 ERFP50548 548 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 SLC25A1P53007 311 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 TPTEP56180 551 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 OR51L1Q8NGJ5 315 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 OR6K6Q8NGW6 343 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 SPTSSAQ969W0 71 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 TMEM186Q96B77 213 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 SLC7A6OSQ96CW6 309 aaPredicted RBP12.79□□□□□ -0.36
USP39-217ENST00000491659 MAP6Q96JE9 813 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 ZNF582Q96NG8 517 aaPredicted RBP12.79□□□□□ -0.36
USP39-217ENST00000491659 FEVQ99581 238 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 GAL3ST1Q99999 423 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 HCAR1Q9BXC0 346 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 ZNF665Q9H7R5 613 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 PNRC2Q9NPJ4 139 aaKnown RBP12.79□□□□□ -0.36
USP39-217ENST00000491659 IL19Q9UHD0 177 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 COMMD3-BMI1R4GMX3 469 aa12.79□□□□□ -0.36
USP39-217ENST00000491659 M0R135 149 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 LCATP04180 440 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 GYPBP06028 91 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 SPARCP09486 303 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 ANPEPP15144 967 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 SELEP16581 610 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 SPI1P17947 270 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 GRK5P34947 590 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 SRP14P37108 136 aaKnown RBP12.78□□□□□ -0.36
USP39-217ENST00000491659 RPS27P42677 84 aaKnown RBP12.78□□□□□ -0.36
USP39-217ENST00000491659 ENTPD1P49961 510 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 BLVRAP53004 296 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 LMO4P61968 165 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 MALLQ13021 153 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 KRTAP27-1Q3LI81 207 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 ZNF362Q5T0B9 420 aaPredicted RBP12.78□□□□□ -0.36
USP39-217ENST00000491659 OR2T2Q6IF00 324 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 Q6ZR03 302 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 OR8G5Q8NG78 346 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 ZNF799Q96GE5 643 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 C1QTNF5Q9BXJ0 243 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 ZNF556Q9HAH1 456 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 CMC2Q9NRP2 79 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 HIF1ANQ9NWT6 349 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 PDP1Q9P0J1 537 aaPredicted RBP12.78□□□□□ -0.36
USP39-217ENST00000491659 POMPQ9Y244 141 aa12.78□□□□□ -0.36
USP39-217ENST00000491659 TRAV20A0A0B4J274 112 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 EBAG9O00559 213 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 FKBP6O75344 327 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 IGHV2-5P01817 119 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 PAICSP22234 425 aaKnown RBP12.77□□□□□ -0.37
USP39-217ENST00000491659 SLC6A9P48067 706 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 SPRNQ5BIV9 151 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 ACSM5Q6NUN0 579 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 SLC27A4Q6P1M0 643 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 LYPD4Q6UWN0 246 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 COLCA1Q6ZS62 124 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 CXXC5Q7LFL8 322 aaKnown RBP12.77□□□□□ -0.37
USP39-217ENST00000491659 DCXRQ7Z4W1 244 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 TMEM179BQ7Z7N9 219 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 IQCF1Q8N6M8 205 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 ATG16L2Q8NAA4 619 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 OR10AD1Q8NGE0 317 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 OR13G1Q8NGZ3 307 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 ITLN1Q8WWA0 313 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 ZNRF4Q8WWF5 429 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 OR2V2Q96R30 315 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 MDFIQ99750 246 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 COPS4Q9BT78 406 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 NMNAT2Q9BZQ4 307 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 WDR76Q9H967 626 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 DDX28Q9NUL7 540 aaKnown RBP12.77□□□□□ -0.37
USP39-217ENST00000491659 TMEM106BQ9NUM4 274 aa12.77□□□□□ -0.37
USP39-217ENST00000491659 NPTNQ9Y639 398 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms