RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 MEDAGQ5VYS4 303 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 KCTD18Q6PI47 426 aaPredicted RBP12.56□□□□□ -0.4
LIMS3-205ENST00000487150 LYPD4Q6UWN0 246 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 COLCA1Q6ZS62 124 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.56□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF555Q8NEP9 628 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 ST7LQ8TDW4 575 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 ZNRF4Q8WWF5 429 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 IL4I1Q96RQ9 567 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 TEAD3Q99594 435 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 OR2J1Q9GZK6 312 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 CENPMQ9NSP4 180 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 SMPD3Q9NY59 655 aaPredicted RBP12.56□□□□□ -0.4
LIMS3-205ENST00000487150 TAAR3PQ9P1P4 343 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIMS3-205ENST00000487150 NOP16Q9Y3C1 178 aaKnown RBP12.56□□□□□ -0.4
LIMS3-205ENST00000487150 MYO9AB2RTY4 2548 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 PDZD2O15018 2839 aa12.56□□□□□ -0.4
LIMS3-205ENST00000487150 TMEM129A0AVI4 362 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 H0YHG0 523 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 NDUFS8O00217 210 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 LCATP04180 440 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 ADRA2AP08913 450 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 DBHP09172 617 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 H2BFMP0C1H6 154 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 CFL1P23528 166 aaKnown RBP12.55□□□□□ -0.4
LIMS3-205ENST00000487150 HTR1FP30939 366 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 NAA10P41227 235 aaPredicted RBP12.55□□□□□ -0.4
LIMS3-205ENST00000487150 MRPS11P82912 194 aaKnown RBP12.55□□□□□ -0.4
LIMS3-205ENST00000487150 SPATA46Q5T0L3 261 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 DEGS2Q6QHC5 323 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 FBXW12Q6X9E4 464 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF540Q8NDQ6 660 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 BBS1Q8NFJ9 593 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 OR52H1Q8NGJ2 320 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 Q96MF0 132 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 SORCS2Q96PQ0 1159 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 MYCBPQ99417 103 aaPredicted RBP12.55□□□□□ -0.4
LIMS3-205ENST00000487150 APOL4Q9BPW4 351 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 RHNO1Q9BSD3 238 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 ABHD6Q9BV23 337 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 NKIRAS2Q9NYR9 191 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 ZDHHC8Q9ULC8 765 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 FZR1Q9UM11 496 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 GMPPBQ9Y5P6 360 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 DSCAMO60469 2012 aa12.55□□□□□ -0.4
LIMS3-205ENST00000487150 CCDC182A6NF36 153 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 XRCC2O43543 280 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 SSX4O60224 188 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 SELENOFO60613 162 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 NGFP01138 241 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 FOSL1P15407 271 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 KITLGP21583 273 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 TNFSF4P23510 183 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 OPRL1P41146 370 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 RPS27P42677 84 aaKnown RBP12.54□□□□□ -0.4
LIMS3-205ENST00000487150 ALDH3B1P43353 468 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 PDLIM4P50479 330 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF81P51508 661 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 ERVS71-1P61550 626 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 SNRPGP62308 76 aaKnown RBP12.54□□□□□ -0.4
LIMS3-205ENST00000487150 SLC25A30Q5SVS4 291 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 MRPL21Q7Z2W9 205 aaKnown RBP12.54□□□□□ -0.4
LIMS3-205ENST00000487150 KRTAP1-3Q8IUG1 177 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF283Q8N7M2 679 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 WFDC11Q8NEX6 87 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 OR10S1Q8NGN2 331 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 THEM6Q8WUY1 208 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 SLC7A6Q92536 515 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 ITFG2Q969R8 447 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 HAVCR1Q96D42 359 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 Q96MT0 163 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 MROQ9BYG7 248 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 RGCCQ9H4X1 137 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF391Q9UJN7 358 aa12.54□□□□□ -0.4
LIMS3-205ENST00000487150 LOC390937A0A1W2PQ73 354 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 C17orf100A8MU93 164 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ANKRD65E5RJM6 399 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF670-ZNF695F2Z2N8 137 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 CASQ2O14958 399 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ZNF254O75437 659 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 SLC25A16P16260 332 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ALOX5APP20292 161 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ATP6V1E1P36543 226 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 POLR2IP36954 125 aaKnown RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ELF3P78545 371 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 DBPQ10586 325 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 SNCBQ16143 134 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 MSMPQ1L6U9 139 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 ZIK1Q3SY52 487 aaPredicted RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 KRT77Q7Z794 578 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 FAM168AQ92567 244 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 MRPL48Q96GC5 212 aaKnown RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 MBOAT4Q96T53 435 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 PIMREGQ9BSJ6 248 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 EGLN1Q9GZT9 426 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 VCX3BQ9H321 246 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 CLN6Q9NWW5 311 aa12.53□□□□□ -0.4
LIMS3-205ENST00000487150 PURGQ9UJV8 347 aaKnown RBP12.53□□□□□ -0.4
LIMS3-205ENST00000487150 STARD10Q9Y365 291 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms