RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CDONQ4KMG0 1287 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 DPY19L4Q7Z388 723 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 GPR141Q7Z602 305 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 OR1K1Q8NGR3 316 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 HAVCR2Q8TDQ0 301 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 C11orf40Q8WZ69 217 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 COG8Q96MW5 612 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 ALKBH3Q96Q83 286 aaPredicted RBP14.78□□□□□ -0.04
VIM-205ENST00000485947 SEC61A2Q9H9S3 476 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 CRLF2Q9HC73 371 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 NDUFA13Q9P0J0 144 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 COPS3Q9UNS2 423 aa14.78□□□□□ -0.04
VIM-205ENST00000485947 USF3Q68DE3 2245 aa14.77□□□□□ -0.04
VIM-205ENST00000485947 M0R1B8 84 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 SEC14L2O76054 403 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 MT-ND5P03915 603 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 HEXAP06865 529 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 SPARCP09486 303 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 PSMB9P28065 219 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 GP2P55259 537 aaKnown RBP14.77□□□□□ -0.05
VIM-205ENST00000485947 UBE2NP61088 152 aaKnown RBP14.77□□□□□ -0.05
VIM-205ENST00000485947 ROR2Q01974 943 aaKnown RBP14.77□□□□□ -0.05
VIM-205ENST00000485947 BDH1Q02338 343 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 EGR3Q06889 387 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 ACSM1Q08AH1 577 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 CEACAM16Q2WEN9 425 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 TBRG1Q3YBR2 411 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 SLC18B1Q6NT16 456 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 ZNF322Q6U7Q0 402 aaPredicted RBP14.77□□□□□ -0.05
VIM-205ENST00000485947 PLEKHG7Q6ZR37 379 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 KCTD20Q7Z5Y7 419 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 FBXL14Q8N1E6 418 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 ZNF485Q8NCK3 441 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 OR13F1Q8NGS4 319 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 BCL2L2Q92843 193 aaPredicted RBP14.77□□□□□ -0.05
VIM-205ENST00000485947 FOXN4Q96NZ1 517 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 OR5M11Q96RB7 305 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 FOXB1Q99853 325 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 WACQ9BTA9 647 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 CDADC1Q9BWV3 514 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 CBLN4Q9NTU7 201 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 POU2F3Q9UKI9 436 aa14.77□□□□□ -0.05
VIM-205ENST00000485947 SMIM31A0A1B0GVY4 71 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 H7C1Q1 480 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 INMTO95050 263 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 MPZL1O95297 269 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 CD8AP01732 235 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 TAS2R43P59537 309 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 MLLT11Q13015 90 aaPredicted RBP14.76□□□□□ -0.05
VIM-205ENST00000485947 MEP1BQ16820 701 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 TIGD6Q17RP2 521 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 OR2G6Q5TZ20 316 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 KCTD18Q6PI47 426 aaPredicted RBP14.76□□□□□ -0.05
VIM-205ENST00000485947 CLEC9AQ6UXN8 241 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 SSX6Q7RTT6 188 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 SATL1Q86VE3 508 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 SNX33Q8WV41 574 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 SPRYD4Q8WW59 207 aaPredicted RBP14.76□□□□□ -0.05
VIM-205ENST00000485947 NEUROG1Q92886 237 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 NABP1Q96AH0 204 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 MGLLQ99685 303 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 SIAEQ9HAT2 523 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 TMEM38BQ9NVV0 291 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 CRNNQ9UBG3 495 aaPredicted RBP14.76□□□□□ -0.05
VIM-205ENST00000485947 FBXO9Q9UK97 447 aaPredicted RBP14.76□□□□□ -0.05
VIM-205ENST00000485947 POLR1DQ9Y2S0 133 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 JMJD1CQ15652 2540 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 CSPG4Q6UVK1 2322 aa14.76□□□□□ -0.05
VIM-205ENST00000485947 DPPA5A6NC42 116 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 A6NHS1 94 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 E7EQL1 145 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 SULT1C4O75897 302 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 APOBEC3AP31941 199 aaPredicted RBP14.75□□□□□ -0.05
VIM-205ENST00000485947 CDAP32320 146 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 HCCSP53701 268 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 MRPL28Q13084 256 aaKnown RBP14.75□□□□□ -0.05
VIM-205ENST00000485947 EIF2B1Q14232 305 aaKnown RBP14.75□□□□□ -0.05
VIM-205ENST00000485947 SGCAQ16586 387 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 ARMCX4Q5H9R4 360 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 FAM27BQ5VT28 67 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 C9orf135Q5VTT2 229 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 ZNF627Q7L945 461 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 LINGO2Q7L985 606 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 FAM220AQ7Z4H9 259 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 MUC15Q8N387 334 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 OR2AJ1Q8NGZ0 328 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 THEM6Q8WUY1 208 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 C4orf36Q96KX1 117 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 GSX1Q9H4S2 264 aaPredicted RBP14.75□□□□□ -0.05
VIM-205ENST00000485947 CYB5R1Q9UHQ9 305 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 RTTNQ86VV8 2226 aa14.75□□□□□ -0.05
VIM-205ENST00000485947 A0A1W2PR80 420 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 FARS2O95363 451 aaKnown RBP14.74□□□□□ -0.05
VIM-205ENST00000485947 SCG5P05408 212 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 KRT8P05787 483 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 CST2P09228 141 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 TACSTD2P09758 323 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 PSKH1P11801 424 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 DSCR9P59020 149 aa14.74□□□□□ -0.05
VIM-205ENST00000485947 ROM1Q03395 351 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms