RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 EIF5AP63241 154 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 IL1RL1Q01638 556 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 ST3GAL4Q11206 333 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 PLD1Q13393 1074 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 PON2Q15165 354 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 GOLGA7BQ2TAP0 167 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 GLYR1Q49A26 553 aaPredicted RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 IFI44LQ53G44 452 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 GPRC6AQ5T6X5 926 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 MARC1Q5VT66 337 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 METTL11BQ5VVY1 283 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 PYHIN1Q6K0P9 492 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 PMF1Q6P1K2 205 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 TMEM107Q6UX40 140 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 CERS6Q6ZMG9 384 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 GALNT10Q86SR1 603 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 TPRA1Q86W33 373 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 LRRC28Q86X40 367 aaPredicted RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 SVBPQ8N300 66 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 LIX1Q8N485 282 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 OR1M1Q8NGA1 313 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 OR5B17Q8NGF7 314 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 OR8J1Q8NGP2 316 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 OR8K3Q8NH51 312 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 OR56B4Q8NH76 319 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 RNASE11Q8TAA1 199 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 FBXO30Q8TB52 745 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 NT5C3BQ969T7 300 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 CXorf40BQ96DE9 158 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 PEBP4Q96S96 227 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 P2RY13Q9BPV8 354 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 NLNQ9BYT8 704 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SLC5A7Q9GZV3 580 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SLC25A51Q9H1U9 297 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 ALG9Q9H6U8 611 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 EXOSC4Q9NPD3 245 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 TMEM138Q9NPI0 162 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 TREX1Q9NSU2 369 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 EXD2Q9NVH0 621 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 HPF1Q9NWY4 346 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 NDUFB11Q9NX14 153 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SEC14L3Q9UDX4 400 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 TBC1D24Q9ULP9 559 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SNX6Q9UNH7 406 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 DIMT1Q9UNQ2 313 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 EXOSC1Q9Y3B2 195 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 IGKV6D-21A0A0A0MT36 114 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 LINC00854A0A1B0GVQ3 168 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 A0A1W2PQL4 384 aaPredicted RBP4.38□□□□□ -1.71
USP40-213ENST00000483216 C7orf66A4D0T2 115 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 METTL21EPA6NDL7 271 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 HMSDA8MTL9 139 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 TNFRSF11BO00300 401 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 RFXANKO14593 260 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 IMPA2O14732 288 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 DNAJB6O75190 326 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 RHBDL1O75783 438 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 AQP8O94778 261 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SERPINA3P01011 423 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 FGF1P05230 155 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 STSP08842 583 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SNRPCP09234 159 aaKnown RBP4.38□□□□□ -1.71
USP40-213ENST00000483216 LINC00032P0C843 101 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 CPN1P15169 458 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 ZNF3P17036 446 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 KLK2P20151 261 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 GSTM3P21266 225 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 FMO3P31513 532 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 KDELR2P33947 212 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SLC1A2P43004 574 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 CDH4P55283 916 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 KIAA1024LP59773 190 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 RAB5BP61020 215 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 BDH1Q02338 343 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 PUDPQ08623 228 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 RAB40BQ12829 278 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 IL18Q14116 193 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 VGLL4Q14135 290 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 HMGN3Q15651 99 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 HKDC1Q2TB90 917 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SLC39A12Q504Y0 691 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SPIN4Q56A73 249 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 FHL5Q5TD97 284 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SAXO2Q658L1 398 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 ZNF57Q68EA5 555 aaPredicted RBP4.38□□□□□ -1.71
USP40-213ENST00000483216 RTL6Q6ICC9 239 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 TBPL2Q6SJ96 375 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 DLEU7Q6UYE1 221 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 TFAP2EQ6VUC0 442 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 MOB2Q70IA6 237 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SLC34A3Q8N130 599 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 C9orf62Q8N4C0 152 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 FAM83FQ8NEG4 500 aaPredicted RBP4.38□□□□□ -1.71
USP40-213ENST00000483216 OR10A6Q8NH74 314 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 CNIH3Q8TBE1 160 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 SLC7A13Q8TCU3 470 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 HAVCR2Q8TDQ0 301 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 GEMIN6Q8WXD5 167 aaKnown RBP4.38□□□□□ -1.71
USP40-213ENST00000483216 YIPF5Q969M3 257 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 MRPL53Q96EL3 112 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms