RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 NT5MQ9NPB1 228 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 SLC7A8Q9UHI5 535 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 SH3BGRL2Q9UJC5 107 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 LSM7Q9UK45 103 aaKnown RBP0.47□□□□□ -2.33
UBXN4-207ENST00000471246 VANGL2Q9ULK5 521 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 GOLT1BQ9Y3E0 138 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 NPTNQ9Y639 398 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 AP1M2Q9Y6Q5 423 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 SPTAN1Q13813 2472 aaKnown RBP0.47□□□□□ -2.33
UBXN4-207ENST00000471246 TEX15Q9BXT5 2789 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 PIEZO2Q9H5I5 2752 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 VCANP13611 3396 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 SPG11Q96JI7 2443 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 CNOT1A5YKK6 2376 aaKnown RBP0.47□□□□□ -2.33
UBXN4-207ENST00000471246 ATP10AO60312 1499 aa0.47□□□□□ -2.33
UBXN4-207ENST00000471246 MACF1Q9UPN3 7388 aaKnown RBP0.47□□□□□ -2.33
UBXN4-207ENST00000471246 PALLDQ8WX93 1383 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 CFAP46Q8IYW2 2715 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 FBN2P35556 2912 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 PCNX1Q96RV3 2341 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 OR5H1A6NKK0 313 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 GABRR3A8MPY1 467 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 KRBOX1C9JBD0 128 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 NDUFC2-KCTD14E9PQ53 114 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MANBAO00462 879 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MFNGO00587 321 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MAGEB3O15480 346 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 EIF1BO60739 113 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 B3GALNT1O75752 331 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 GLSO94925 669 aaPredicted RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 PAHP00439 452 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 EIF4EP06730 217 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ASGR1P07306 291 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 CTSLP07711 333 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ACSM4P0C7M7 580 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 INAFM2P0DMQ5 153 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ERGP11308 486 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ZNF35P13682 527 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 NTF3P20783 257 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MPV17P39210 176 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 EIF1P41567 113 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 CSNK1EP49674 416 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 GFERP55789 205 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 RPL23P62829 140 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MRPS22P82650 360 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 GK3PQ14409 553 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 QPRTQ15274 297 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 CFAP157Q5JU67 520 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 SOHLH1Q5JUK2 328 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ATAD3BQ5T9A4 648 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 DEGS2Q6QHC5 323 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 TGIF2LXQ8IUE1 241 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 SGPP2Q8IWX5 399 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 LRRC75A-AS1Q8N1F1 130 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 STEAP2Q8NFT2 490 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 OR2A1Q8NGT9 310 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 PLPPR1Q8TBJ4 325 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 CPNE4Q96A23 557 aaPredicted RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 TMEM159Q96B96 161 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ZBED3Q96IU2 234 aaPredicted RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 PKNOX2Q96KN3 472 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 C16orf45Q96MC5 204 aaPredicted RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MICU1Q9BPX6 476 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 C1orf50Q9BV19 199 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ETNK2Q9NVF9 386 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 DDX49Q9Y6V7 483 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 R4GN34 69 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 ZFHX3Q15911 3703 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 RANBP2P49792 3224 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 IQSEC2Q5JU85 1478 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 HYDINQ4G0P3 5121 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 NSD1Q96L73 2696 aaPredicted RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 FLNAP21333 2647 aaKnown RBP0.46□□□□□ -2.34
UBXN4-207ENST00000471246 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 PDZD2O15018 2839 aa0.46□□□□□ -2.34
UBXN4-207ENST00000471246 CEP290O15078 2479 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 ZFHX4Q86UP3 3567 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 CEP250Q9BV73 2442 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 C2orf16Q68DN1 1984 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 IGKV1-8A0A0C4DH67 115 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 A0A1B0GUH1 482 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 C4orf51C9J302 202 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 NUPL2O15504 423 aaKnown RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 GMFGO60234 142 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 PLIN3O60664 434 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 NOL3O60936 208 aaKnown RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 SURF6O75683 361 aaKnown RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 SEMA3DO95025 777 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 CLIC3O95833 236 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 PFN1P07737 140 aaKnown RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 ZNF250P15622 560 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 TCP1P17987 556 aaKnown RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 GGT1P19440 569 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 KITLGP21583 273 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 IFNA8P32881 189 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 GPX4P36969 197 aaPredicted RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 GALR1P47211 349 aa0.45□□□□□ -2.34
UBXN4-207ENST00000471246 CCNHP51946 323 aaPredicted RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 VSX2P58304 361 aaPredicted RBP0.45□□□□□ -2.34
UBXN4-207ENST00000471246 PPIDQ08752 370 aaKnown RBP0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms