RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ST7LQ8TDW4 575 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 SLC30A2Q9BRI3 323 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 BTBD10Q9BSF8 475 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 C1QTNF5Q9BXJ0 243 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 FN3KQ9H479 309 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 PATZ1Q9HBE1 687 aaKnown RBP13.72□□□□□ -0.21
COL9A3-208ENST00000469802 SRA1Q9HD15 236 aaKnown RBP13.72□□□□□ -0.21
COL9A3-208ENST00000469802 CYB5R1Q9UHQ9 305 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 CDH10Q9Y6N8 788 aa13.72□□□□□ -0.21
COL9A3-208ENST00000469802 TMEM178BH3BS89 294 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 MLNRO43193 412 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 DCTN3O75935 186 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 SBK2P0C263 348 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 ACSM4P0C7M7 580 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 ATP6V1B2P21281 511 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 SLC6A9P48067 706 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 CENPAP49450 140 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 GYS2P54840 703 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 SEC61A1P61619 476 aaKnown RBP13.71□□□□□ -0.21
COL9A3-208ENST00000469802 GNGT1P63211 74 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 ZNF770Q6IQ21 691 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-208ENST00000469802 SLC27A4Q6P1M0 643 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 LINC00346Q8IVM7 164 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 KLHL36Q8N4N3 616 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 OR10AD1Q8NGE0 317 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 OR4C15Q8NGM1 316 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 NANPQ8TBE9 248 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 GNPDA2Q8TDQ7 276 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 MEGF10Q96KG7 1140 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 DDOQ99489 341 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 ATF6BQ99941 703 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 C7orf69Q9H7B7 122 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 MRPL22Q9NWU5 206 aaKnown RBP13.71□□□□□ -0.21
COL9A3-208ENST00000469802 KCNG2Q9UJ96 466 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 TMCC3Q9ULS5 477 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 PCDHB10Q9UN67 800 aa13.71□□□□□ -0.21
COL9A3-208ENST00000469802 NBEAL1Q6ZS30 2694 aa13.71□□□□□ -0.22
COL9A3-208ENST00000469802 IFNL4K9M1U5 179 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 BHLHE40O14503 412 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 RGS9O75916 674 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-208ENST00000469802 KRT36O76013 467 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 NOS3P29474 1203 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 MDH2P40926 338 aaKnown RBP13.7□□□□□ -0.22
COL9A3-208ENST00000469802 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.7□□□□□ -0.22
COL9A3-208ENST00000469802 ECH1Q13011 328 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 SLC36A3Q495N2 470 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 RPL13AP3Q6NVV1 102 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 MUC20Q8N307 709 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-208ENST00000469802 OR9Q2Q8NGE9 314 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 OR13G1Q8NGZ3 307 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF582Q96NG8 517 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-208ENST00000469802 PLA2G12AQ9BZM1 189 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 TRIM15Q9C019 465 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 EGLN3Q9H6Z9 239 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 MMP26Q9NRE1 261 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 ACTR3BQ9P1U1 418 aa13.7□□□□□ -0.22
COL9A3-208ENST00000469802 TCRBV5S2A0A599 114 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 H0YL77 283 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 TRAPPC2LH3BP13 241 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 FSTL3O95633 263 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF12P17014 697 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 TRAP1Q12931 704 aaKnown RBP13.69□□□□□ -0.22
COL9A3-208ENST00000469802 GK2Q14410 553 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF181Q2M3W8 571 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 CLEC12AQ5QGZ9 265 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF362Q5T0B9 420 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-208ENST00000469802 LINC00471Q8N535 108 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 ATG16L2Q8NAA4 619 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 OR52L1Q8NGH7 329 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 OR52E2Q8NGJ4 325 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 OR8D4Q8NGM9 314 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 OR10S1Q8NGN2 331 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 FAM216AQ8WUB2 273 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 DVL3Q92997 716 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-208ENST00000469802 MAP6Q96JE9 813 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 PITX2Q99697 317 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 SLC6A7Q99884 636 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 WDR76Q9H967 626 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 DDX28Q9NUL7 540 aaKnown RBP13.69□□□□□ -0.22
COL9A3-208ENST00000469802 IL20Q9NYY1 176 aa13.69□□□□□ -0.22
COL9A3-208ENST00000469802 CEACAM18A8MTB9 384 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 F5H5P2 479 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 HAX1O00165 279 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 PSKH1P11801 424 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 OTX1P32242 354 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-208ENST00000469802 GATA4P43694 442 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 SRP9P49458 86 aaKnown RBP13.68□□□□□ -0.22
COL9A3-208ENST00000469802 COMPP49747 757 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF154Q13106 437 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 SLC35F1Q5T1Q4 408 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 CYP2R1Q6VVX0 501 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 BHLHE23Q8NDY6 225 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 OR2AJ1Q8NGZ0 328 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF420Q8TAQ5 688 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-208ENST00000469802 POP5Q969H6 163 aaKnown RBP13.68□□□□□ -0.22
COL9A3-208ENST00000469802 JMJD8Q96S16 334 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 SUCNR1Q9BXA5 334 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 ESM1Q9NQ30 184 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 LRCH1Q9Y2L9 728 aa13.68□□□□□ -0.22
COL9A3-208ENST00000469802 INSIG2Q9Y5U4 225 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms