RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 YIPF5Q969M3 257 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 LRRC58Q96CX6 371 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 SGTBQ96EQ0 304 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 ZNF583Q96ND8 569 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 DPCDQ9BVM2 203 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 ZNF416Q9BWM5 594 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TMEM120AQ9BXJ8 343 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 BCL2L14Q9BZR8 327 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 RACGAP1Q9H0H5 632 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 KCNN2Q9H2S1 579 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 ZMAT3Q9HA38 289 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 SIAEQ9HAT2 523 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 SMURF2Q9HAU4 748 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 HINT3Q9NQE9 182 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 INIPQ9NRY2 104 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 ZNF275Q9NSD4 429 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 SLCO1C1Q9NYB5 712 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 NKIRAS2Q9NYR9 191 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TAAR3PQ9P1P4 343 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 RIMS3Q9UJD0 308 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 FZR1Q9UM11 496 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 MED31Q9Y3C7 131 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 GMNCA6NCL1 334 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 FXYD1O00168 92 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 AP4M1O00189 453 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 MRASO14807 208 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 PPIHO43447 177 aaKnown RBP6.16□□□□□ -1.42
USP54-208ENST00000461520 RP2O75695 350 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 CLPTM1O96005 669 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 IGHV3-13P01766 116 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 MT-ND5P03915 603 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 LCKP06239 509 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 MSMBP08118 114 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 TROVE2P10155 538 aaKnown RBP eCLIP6.16□□□□□ -1.42
USP54-208ENST00000461520 ANPEPP15144 967 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 TNFRSF1BP20333 461 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 FPR3P25089 353 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 IFNA8P32881 189 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 KDELR2P33947 212 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 APLNRP35414 380 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 AQP2P41181 271 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 CRYBB2P43320 205 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 MAGEB1P43366 347 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 OR1E2P47887 323 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 MYBPC1Q00872 1141 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 HSF2Q03933 536 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 ST3GAL3Q11203 375 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 SCGB2A2Q13296 93 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 TAF11Q15544 211 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 PLA1AQ53H76 456 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 ARMC4Q5T2S8 1044 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 LCE1AQ5T7P2 110 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 UNQ6126/PRO20091Q6UXV3 157 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 C1orf174Q8IYL3 243 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 LRRC18Q8N456 261 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 SYT14Q8NB59 555 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 PCYOX1LQ8NBM8 494 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 FNDC8Q8TC99 324 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 C10orf82Q8WW14 230 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 NABP1Q96AH0 204 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 TMEM186Q96B77 213 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 ZNF48Q96MX3 618 aaPredicted RBP6.16□□□□□ -1.42
USP54-208ENST00000461520 MS4A7Q9GZW8 240 aaPredicted RBP6.16□□□□□ -1.42
USP54-208ENST00000461520 TXNIPQ9H3M7 391 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 C20orf141Q9NUB4 165 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 HIF1ANQ9NWT6 349 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 GID8Q9NWU2 228 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 GRIP1Q9Y3R0 1128 aa6.16□□□□□ -1.42
USP54-208ENST00000461520 A0A1W2PPL8 197 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 ELOVL7A1L3X0 281 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 FAM220BPB1ANY3 271 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 FAM157AC9JC47 383 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 SHOX2O60902 331 aaPredicted RBP6.15□□□□□ -1.42
USP54-208ENST00000461520 SLC2A10O95528 541 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 IGHMP01871 453 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 H2AFXP16104 143 aaPredicted RBP6.15□□□□□ -1.42
USP54-208ENST00000461520 ZNF32P17041 273 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 CCNOP22674 350 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 STOMP27105 288 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 ERVS71-1P61550 626 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 LMO4P61968 165 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 SELENOWP63302 87 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 CCL8P80075 99 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 CD47Q08722 323 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 ALKBH6Q3KRA9 238 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 ANKDD1AQ495B1 522 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 LRRC23Q53EV4 343 aaPredicted RBP6.15□□□□□ -1.42
USP54-208ENST00000461520 CYBRD1Q53TN4 286 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 ALG10Q5BKT4 473 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 PABPC1L2AQ5JQF8 200 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 THEM4Q5T1C6 240 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 FAM27BQ5VT28 67 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 FAM205BPQ63HN1 556 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 SLC25A47Q6Q0C1 308 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 RINLQ6ZS11 566 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 TEX29Q8N6K0 151 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 OR2T12Q8NG77 320 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 OR1J1Q8NGS3 322 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 OR51F2Q8NH61 342 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 MOSPD2Q8NHP6 518 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms