RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RNF212BA8MTL3 300 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 SHISA9B4DS77 424 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 J3QRE1 110 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF593O00488 134 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-208ENST00000437607 GPRIN2O60269 458 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 PTHP01270 115 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ITGA5P08648 1049 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 OR8G3PP0DMU2 310 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 COX5AP20674 150 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 IL32P24001 234 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 PSMB9P28065 219 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 MAP2K4P45985 399 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 CAPZA2P47755 286 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ETV1P50549 477 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 WNT4P56705 351 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 PCBD1P61457 104 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ARF1P84077 181 aaKnown RBP10.54□□□□□ -0.72
PTPRF-208ENST00000437607 SCRN3Q0VDG4 424 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 GALEQ14376 348 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 IRF3Q14653 427 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 TEX30Q5JUR7 227 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 RNLSQ5VYX0 342 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF322Q6U7Q0 402 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-208ENST00000437607 BHLHA15Q7RTS1 189 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-208ENST00000437607 SLC16A14Q7RTX9 510 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 DCXRQ7Z4W1 244 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 SLC22A24Q8N4F4 322 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 RFLNBQ8N5W9 214 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 OR52N1Q8NH53 320 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 OR52N5Q8NH56 324 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 THEM6Q8WUY1 208 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 RORBQ92753 470 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF837Q96EG3 531 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF416Q9BWM5 594 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 SIAEQ9HAT2 523 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ACOT13Q9NPJ3 140 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 YAE1D1Q9NRH1 226 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 NPAP1Q9NZP6 1156 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 ASH2LQ9UBL3 628 aa10.54□□□□□ -0.72
PTPRF-208ENST00000437607 CAB39Q9Y376 341 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-208ENST00000437607 CIB4A0PJX0 185 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 TRIM64CA6NLI5 447 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF878C9JN71 531 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 RAD51DO75771 328 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 LYZL6O75951 148 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 MT-ND5P03915 603 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 KRT8P05787 483 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 ADRA2AP08913 450 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 CST2P09228 141 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 LIMS3P0CW19 117 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 LIMS4P0CW20 117 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 PSKH1P11801 424 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF85Q03923 595 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 EGR3Q06889 387 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 ENDOGQ14249 297 aaKnown RBP10.53□□□□□ -0.72
PTPRF-208ENST00000437607 P2RY6Q15077 328 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 MED22Q15528 200 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 ANKRD16Q6P6B7 361 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 KCTD18Q6PI47 426 aaPredicted RBP10.53□□□□□ -0.72
PTPRF-208ENST00000437607 SSX6Q7RTT6 188 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 KRT77Q7Z794 578 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 LHFPL3Q86UP9 236 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 DTX2Q86UW9 622 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 LRRC18Q8N456 261 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 C1orf162Q8NEQ5 155 aaPredicted RBP10.53□□□□□ -0.72
PTPRF-208ENST00000437607 OR1K1Q8NGR3 316 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 C4orf36Q96KX1 117 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 C1orf198Q9H425 327 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 NGBQ9NPG2 151 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 TRIM36Q9NQ86 728 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 CLEC2DQ9UHP7 191 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 CYB5R1Q9UHQ9 305 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 GNG8Q9UK08 70 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 KLHDC2Q9Y2U9 406 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 LHFPL6Q9Y693 200 aa10.53□□□□□ -0.72
PTPRF-208ENST00000437607 IGHV4-30-2A0A087WSY4 118 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 A0A096LPE4 126 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 A0A1W2PPZ6 126 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 DOK2O60496 412 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 SCG5P05408 212 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 LCKP06239 509 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 HSMCR30P0CW71 290 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 ALOX5APP20292 161 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 PCMT1P22061 227 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 IGHV1-2P23083 117 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 HCCSP53701 268 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 FOXG1P55316 489 aaPredicted RBP10.52□□□□□ -0.73
PTPRF-208ENST00000437607 TAS2R43P59537 309 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 UBE2NP61088 152 aaKnown RBP10.52□□□□□ -0.73
PTPRF-208ENST00000437607 EMX1Q04741 257 aaPredicted RBP10.52□□□□□ -0.73
PTPRF-208ENST00000437607 PCK2Q16822 640 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 SLC36A2Q495M3 483 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 CDONQ4KMG0 1287 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 OR2G6Q5TZ20 316 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 FAM27BQ5VT28 67 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 CORO6Q6QEF8 472 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 PLEKHG7Q6ZR37 379 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 SPATC1Q76KD6 591 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF627Q7L945 461 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 DPPA2Q7Z7J5 298 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms