RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TVP23BQ9NYZ1 205 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 STARD10Q9Y365 291 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 ACANP16112 2415 aa9.79□□□□□ -0.84
COL28A1-203ENST00000435823 M0R135 149 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 TPD52L2O43399 206 aaKnown RBP9.78□□□□□ -0.84
COL28A1-203ENST00000435823 LCATP04180 440 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 HEXAP06865 529 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 ACSM4P0C7M7 580 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 MALLQ13021 153 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 PSG7Q13046 419 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 EIF2B1Q14232 305 aaKnown RBP9.78□□□□□ -0.84
COL28A1-203ENST00000435823 PCK2Q16822 640 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 MAPK1IP1LQ8NDC0 245 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 RDH5Q92781 318 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 ZMYND19Q96E35 227 aaPredicted RBP9.78□□□□□ -0.84
COL28A1-203ENST00000435823 ZNF799Q96GE5 643 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 DIRC2Q96SL1 478 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 CIB1Q99828 191 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 SMR3AQ99954 134 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 PKP2Q99959 881 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 POFUT1Q9H488 388 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 CENPMQ9NSP4 180 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 DECR2Q9NUI1 292 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 DDX28Q9NUL7 540 aaKnown RBP9.78□□□□□ -0.84
COL28A1-203ENST00000435823 NKIRAS2Q9NYR9 191 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 PTTG3PQ9NZH4 202 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 ORC6Q9Y5N6 252 aa9.78□□□□□ -0.84
COL28A1-203ENST00000435823 ZAR1LA6NP61 321 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 VWC2LB2RUY7 222 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 ZNF878C9JN71 531 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 H3BNX3 289 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 SPRY3O43610 288 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 HPXP02790 462 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 RAC2P15153 192 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 KITLGP21583 273 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 USF1P22415 310 aaPredicted RBP9.77□□□□□ -0.85
COL28A1-203ENST00000435823 NR4A2P43354 598 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 MAGEB1P43366 347 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 SLC15A1P46059 708 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 SLC6A9P48067 706 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 MMP15P51511 669 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 CCL8P80075 99 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 MRPS11P82912 194 aaKnown RBP9.77□□□□□ -0.85
COL28A1-203ENST00000435823 PPP2R2BQ00005 443 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 LOXL1Q08397 574 aaPredicted RBP9.77□□□□□ -0.85
COL28A1-203ENST00000435823 GGTLC2Q14390 218 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 KRTAP27-1Q3LI81 207 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 FAM209AQ5JX71 171 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 LCN1P1Q5VSP4 162 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 SLX4IPQ5VYV7 408 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 DRAM2Q6UX65 266 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 FBXW12Q6X9E4 464 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 DPY19L4Q7Z388 723 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 OR10S1Q8NGN2 331 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 ST7LQ8TDW4 575 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 HAVCR1Q96D42 359 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 CMBLQ96DG6 245 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 C1QTNF5Q9BXJ0 243 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 EGLN1Q9GZT9 426 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 TOR3AQ9H497 397 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 MARCH7Q9H992 704 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 CHODLQ9H9P2 273 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 SAP30LQ9HAJ7 183 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 TMEFF2Q9UIK5 374 aaPredicted RBP9.77□□□□□ -0.85
COL28A1-203ENST00000435823 PURGQ9UJV8 347 aaKnown RBP9.77□□□□□ -0.85
COL28A1-203ENST00000435823 ZDHHC8Q9ULC8 765 aa9.77□□□□□ -0.85
COL28A1-203ENST00000435823 ZSCAN5BA6NJL1 495 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 NCR1O76036 304 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 LY6G6DO95868 133 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 IGHV1-46P01743 117 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 APOC1P02654 83 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 LYNP07948 512 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 ADH4P08319 380 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 PSKH1P11801 424 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 SELEP16581 610 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 ACHEP22303 614 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 TNFSF4P23510 183 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 GIFP27352 417 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 HSD11B1P28845 292 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 GRB2P62993 217 aaKnown RBP9.76□□□□□ -0.85
COL28A1-203ENST00000435823 APOFQ13790 326 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 TSTQ16762 297 aaKnown RBP9.76□□□□□ -0.85
COL28A1-203ENST00000435823 RSPO1Q2MKA7 263 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-203ENST00000435823 TMEM255AQ5JRV8 349 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 C12orf73Q69YU5 71 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 COLCA1Q6ZS62 124 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 SPATC1Q76KD6 591 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 TIGD4Q8IY51 512 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 ZNF283Q8N7M2 679 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 TCEANCQ8N8B7 351 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 BBS1Q8NFJ9 593 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 GTF3AQ92664 365 aaKnown RBP9.76□□□□□ -0.85
COL28A1-203ENST00000435823 STMN2Q93045 179 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 ZNF582Q96NG8 517 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-203ENST00000435823 KCNJ15Q99712 375 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 GABARAPL3Q9BY60 117 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 BPESC1Q9GZL8 116 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 RIBC2Q9H4K1 309 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 S100A14Q9HCY8 104 aa9.76□□□□□ -0.85
COL28A1-203ENST00000435823 H2AFY2Q9P0M6 372 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms