RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MTNR1AP48039 350 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 SPIBQ01892 262 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 DBPQ10586 325 aaPredicted RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 KRT72Q14CN4 511 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 PGM2L1Q6PCE3 622 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 FBXW12Q6X9E4 464 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 NLRC3Q7RTR2 1065 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 C1orf87Q8N0U7 546 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 C19orf18Q8NEA5 215 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 GJC3Q8NFK1 279 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 NEIL1Q96FI4 390 aaPredicted RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 GPX7Q96SL4 187 aaPredicted RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 HOPXQ9BPY8 73 aaPredicted RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 HCAR1Q9BXC0 346 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 FN3KQ9H479 309 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 TNFRSF19Q9NS68 423 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 MIOXQ9UGB7 285 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 ATPIF1Q9UII2 106 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 POLR3KQ9Y2Y1 108 aaPredicted RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 SOX21Q9Y651 276 aaPredicted RBP12.16□□□□□ -0.46
SDC1-204ENST00000429035 LHFPL6Q9Y693 200 aa12.16□□□□□ -0.46
SDC1-204ENST00000429035 A0A1W2PRQ8 180 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 IQCF6A8MYZ5 107 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 F5H5K5 113 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 J3QW42 95 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 HLA-DQA2P01906 255 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 WNT2P09544 360 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 CD80P33681 288 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 PITPNBP48739 271 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 DGCR6Q14129 220 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 SEC23BQ15437 767 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 PRAMEF6Q5VXH4 476 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 SMARCD3Q6STE5 483 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 LRRN1Q6UXK5 716 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 DPY19L2P2Q6ZN68 376 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 CFAP77Q6ZQR2 320 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 SPATC1Q76KD6 591 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 TSEN54Q7Z6J9 526 aaKnown RBP12.15□□□□□ -0.46
SDC1-204ENST00000429035 PITX2Q99697 317 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 SLC30A2Q9BRI3 323 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 TMEM246Q9BRR3 403 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 MMADHCQ9H3L0 296 aaPredicted RBP12.15□□□□□ -0.46
SDC1-204ENST00000429035 EFCAB1Q9HAE3 211 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 SRA1Q9HD15 236 aaKnown RBP12.15□□□□□ -0.46
SDC1-204ENST00000429035 UFSP2Q9NUQ7 469 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 NDUFAF4Q9P032 175 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 MGAM2Q2M2H8 2515 aa12.15□□□□□ -0.46
SDC1-204ENST00000429035 DCTN6O00399 190 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 NDUFAB1O14561 156 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 KCNAB3O43448 404 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 CCDC22O60826 627 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 PTP4A3O75365 173 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 GMNNO75496 209 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 RNASE1P07998 156 aaKnown RBP12.14□□□□□ -0.47
SDC1-204ENST00000429035 RHCEP18577 417 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 NOS3P29474 1203 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 SLC6A6P31641 620 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 FXYD6P3P58550 94 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 PSME3P61289 254 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 PAX8Q06710 450 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 SLC9A3R2Q15599 337 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 ZNF404Q494X3 552 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 RNF148Q8N7C7 305 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 FAM86B1Q8N7N1 296 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 BOLLQ8N9W6 283 aaKnown RBP12.14□□□□□ -0.47
SDC1-204ENST00000429035 SDR9C7Q8NEX9 313 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 OR11L1Q8NGX0 322 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 OR4K13Q8NH42 304 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 RAB40AQ8WXH6 277 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 ZDHHC16Q969W1 377 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 TECTBQ96PL2 329 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 NMNAT3Q96T66 252 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 NUDT16L1Q9BRJ7 211 aaKnown RBP12.14□□□□□ -0.47
SDC1-204ENST00000429035 IFT27Q9BW83 186 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 CDADC1Q9BWV3 514 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 NSRP1Q9H0G5 558 aaKnown RBP12.14□□□□□ -0.47
SDC1-204ENST00000429035 TMEM165Q9HC07 324 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 RPRD1BQ9NQG5 326 aaKnown RBP12.14□□□□□ -0.47
SDC1-204ENST00000429035 TMEM100Q9NV29 134 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 ADA2Q9NZK5 511 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 CLN8Q9UBY8 286 aa12.14□□□□□ -0.47
SDC1-204ENST00000429035 SAMD4AQ9UPU9 718 aaKnown RBP12.14□□□□□ -0.47
SDC1-204ENST00000429035 IGLV1-36A0A0B4J1U3 117 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 LCATP04180 440 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 OMGP23515 440 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 RAD23AP54725 363 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 IL13RA1P78552 427 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 COX10Q12887 443 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 MALLQ13021 153 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 KCNMB1Q16558 191 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 PRR31Q5SQ13 230 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 GLYATQ6IB77 296 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 BRD3OSQ6XYD6 125 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 MRPL21Q7Z2W9 205 aaKnown RBP12.13□□□□□ -0.47
SDC1-204ENST00000429035 OR2AJ1Q8NGZ0 328 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 SPRYD4Q8WW59 207 aaPredicted RBP12.13□□□□□ -0.47
SDC1-204ENST00000429035 ATF6BQ99941 703 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 OR52D1Q9H346 318 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 B9D1Q9UPM9 204 aa12.13□□□□□ -0.47
SDC1-204ENST00000429035 HOXA3O43365 443 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms