RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 SCCPDHQ8NBX0 429 aa13.81□□□□□ -0.2
CHCHD3-202ENST00000423635 C19orf18Q8NEA5 215 aa13.81□□□□□ -0.2
CHCHD3-202ENST00000423635 MRAPQ8TCY5 172 aa13.81□□□□□ -0.2
CHCHD3-202ENST00000423635 APOBEC3DQ96AK3 386 aaPredicted RBP13.81□□□□□ -0.2
CHCHD3-202ENST00000423635 FBLN5Q9UBX5 448 aa13.81□□□□□ -0.2
CHCHD3-202ENST00000423635 AHCYL1O43865 530 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 HLA-DPB1P04440 258 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 DBHP09172 617 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 FPR3P25089 353 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 IDH3AP50213 366 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 MTPNP58546 118 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 LSM6P62312 80 aaKnown RBP13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 HERPUD1Q15011 391 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 ANKDD1AQ495B1 522 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 AGKQ53H12 422 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 DPP10Q8N608 796 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 OR11L1Q8NGX0 322 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 NPRL2Q8WTW4 380 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 BPIFA2Q96DR5 249 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 CGREF1Q99674 301 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 CCDC28BQ9BUN5 200 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.8□□□□□ -0.26e-6■■■■□ 22.2
CHCHD3-202ENST00000423635 VPREB3Q9UKI3 123 aa13.8□□□□□ -0.2
CHCHD3-202ENST00000423635 NDUFA2O43678 99 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 FAM20BO75063 409 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 CD200P41217 278 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 GZMMP51124 257 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 ARF6P62330 175 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 SLC35E4Q6ICL7 350 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 Q6ZTK2 550 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 DHDDSQ86SQ9 333 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 BHLHE23Q8NDY6 225 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 EBF4Q9BQW3 602 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 ZNRD1Q9P1U0 126 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 BAG5Q9UL15 447 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 FAM96BQ9Y3D0 163 aa13.79□□□□□ -0.2
CHCHD3-202ENST00000423635 TEX13CA0A0J9YWL9 993 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 H7C1C5 153 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 LGALS8O00214 317 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 ECDO95905 644 aaPredicted RBP13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 IFI30P13284 250 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 TNFRSF1BP20333 461 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 LCN6P62502 163 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 MPPED2Q15777 294 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 VMACQ2NL98 169 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 VAX1Q5SQQ9 334 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 COLCA1Q6ZS62 124 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 CROCCP2Q86T23 111 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 OR51A7Q8NH64 312 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 OR10A6Q8NH74 314 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 ECSITQ9BQ95 431 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 MMADHCQ9H3L0 296 aaPredicted RBP13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 CNTD2Q9H8S5 307 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 SMURF1Q9HCE7 757 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 RNF7Q9UBF6 113 aa13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 CAB39Q9Y376 341 aaPredicted RBP13.78□□□□□ -0.2
CHCHD3-202ENST00000423635 BTBD17A6NE02 478 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 RER1O15258 196 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 ADAM20O43506 726 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 SHOX2O60902 331 aaPredicted RBP13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 FCN3O75636 299 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 FBP1P09467 338 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 CTLA4P16410 223 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 HOXA4Q00056 320 aaPredicted RBP13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 CDONQ4KMG0 1287 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 SFRP4Q6FHJ7 346 aaPredicted RBP13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 METAP1DQ6UB28 335 aaPredicted RBP13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 BTN2A1Q7KYR7 527 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 FAM156AQ8NDB6 213 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 CFHR4Q92496 578 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 ZBTB9Q96C00 473 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 ZNF583Q96ND8 569 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 HCAR1Q9BXC0 346 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 RASSF4Q9H2L5 321 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 TRIM36Q9NQ86 728 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 GRHPRQ9UBQ7 328 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 NDUFAF1Q9Y375 327 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 KPTNQ9Y664 436 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 NOTCH3Q9UM47 2321 aa13.77□□□□□ -0.21
CHCHD3-202ENST00000423635 TRAV27A0A087WT01 109 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 ELOVL7A1L3X0 281 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 PRSS37A4D1T9 235 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 RNASEK-C17orf49H0YIS7 233 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 PTBP3O95758 552 aaKnown RBP13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 HIST1H3AP68431 136 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 ST3GAL3Q11203 375 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 KCNMB1Q16558 191 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 RSPO1Q2MKA7 263 aaPredicted RBP13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 HIST2H3PS2Q5TEC6 136 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 PRAMEF6Q5VXH4 476 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 HIST2H3AQ71DI3 136 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 OAFQ86UD1 273 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 PDZD9Q8IXQ8 264 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 PLPP7Q8NBV4 271 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 DMRTB1Q96MA1 342 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 C7orf26Q96N11 449 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 COQ7Q99807 217 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 RABEP2Q9H5N1 569 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 WDR76Q9H967 626 aa13.76□□□□□ -0.21
CHCHD3-202ENST00000423635 UFSP2Q9NUQ7 469 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms