RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.23□□□□□ -0.29
NCKIPSD-204ENST00000416649 TNRC18O15417 2968 aaPredicted RBP13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 UMAD1C9J7I0 102 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 LDB3O75112 727 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 F13BP05160 661 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 OR13C7P0DN81 318 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 HTR2CP28335 458 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 CEBPGP53567 150 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 SPOCK1Q08629 439 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 ZNF684Q5T5D7 378 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 ZNF529Q6P280 563 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 PRSS35Q8N3Z0 413 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 PRDM13Q9H4Q3 707 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 PUS1Q9Y606 427 aaKnown RBP eCLIP13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 MPDZO75970 2070 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 LRRK1Q38SD2 2015 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 EFSO43281 561 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 HLA-DQA2P01906 255 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 SSBP1Q04837 148 aaKnown RBP13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 WDR38Q5JTN6 314 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 ERN2Q76MJ5 926 aaKnown RBP13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 FJX1Q86VR8 437 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 OR56B1Q8NGI3 324 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 FAM174AQ8TBP5 190 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 RPS4Y2Q8TD47 263 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 WFIKKN2Q8TEU8 576 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 SLC25A43Q8WUT9 341 aaPredicted RBP13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 MYOZ1Q9NP98 299 aaPredicted RBP13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 DOK5Q9P104 306 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 URGCP-MRPS24S4R325 110 aa13.22□□□□□ -0.29
NCKIPSD-204ENST00000416649 TRBV5-7A0A0A0MS05 114 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 PRAMEF26H0Y7S4 382 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 HOXB5P09067 269 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 HOXA5P20719 270 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 TACR3P29371 465 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 DDTP30046 118 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 RAB32Q13637 225 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 ZNF674Q2M3X9 581 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 DEFB134Q4QY38 66 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 C14orf28Q4W4Y0 310 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 KIRREL2Q6UWL6 708 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 SLC16A9Q7RTY1 509 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 RAB42Q8N4Z0 105 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 CSNK1A1LQ8N752 337 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 OR13C9Q8NGT0 318 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 GAL3ST3Q96A11 431 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 MRGPRFQ96AM1 343 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 TAAR9Q96RI9 348 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 SMOC1Q9H4F8 434 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 FBXO7Q9Y3I1 522 aa13.21□□□□□ -0.29
NCKIPSD-204ENST00000416649 TMEM212A6NML5 194 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 DUS4LO95620 317 aaKnown RBP13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 SFTPBP07988 381 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 ZNF888P0CJ79 500 aaPredicted RBP13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 CDX1P47902 265 aaPredicted RBP13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 CCINQ13939 588 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 PNLIPRP3Q17RR3 467 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 MIDNQ504T8 468 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 SLC35D3Q5M8T2 416 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 RD3Q7Z3Z2 195 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 REC114Q7Z4M0 266 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 NRSN1Q8IZ57 195 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 MISP3Q96FF7 219 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 INTS14Q96SY0 518 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 AMELYQ99218 206 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 CHST5Q9GZS9 411 aa13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 MRPS18BQ9Y676 258 aaKnown RBP13.21□□□□□ -0.3
NCKIPSD-204ENST00000416649 OR2C1O95371 312 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 PLGP00747 810 aaPredicted RBP13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 HLA-GP17693 338 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 IGFBP4P22692 258 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 ZNF84P51523 738 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 MEF2DQ14814 521 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 GFI1BQ5VTD9 330 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 BTNL8Q6UX41 500 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 DPY19L2P2Q6ZN68 376 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 HIST2H3AQ71DI3 136 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 TGIF2LXQ8IUE1 241 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 TMEM104Q8NE00 496 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 OR51A2Q8NGJ7 313 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 POM121Q96HA1 1249 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 MENTQ9BUN1 341 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 MBNL1Q9NR56 388 aaKnown RBP13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 TAS2R4Q9NYW5 299 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 PISDQ9UG56 409 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 ZDHHC8Q9ULC8 765 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 EML5Q05BV3 1969 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 SLC31A1O15431 190 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 KIR3DL2P43630 455 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 SCAND1P57086 179 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 CYCSP99999 105 aaKnown RBP13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 TEX30Q5JUR7 227 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 AVL9Q8NBF6 648 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 OR14C36Q8NHC7 312 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 GPR61Q9BZJ8 451 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 SLC2A4RGQ9NR83 387 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 GDE1Q9NZC3 331 aa13.2□□□□□ -0.3
NCKIPSD-204ENST00000416649 GPR34Q9UPC5 381 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms