RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 RPS27P42677 84 aaKnown RBP9.68□□□□□ -0.86
USP4-204ENST00000416417 RPS6KA3P51812 740 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 HIST1H3AP68431 136 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 PAX2Q02962 417 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 KCNMB1Q16558 191 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 TUSC1Q2TAM9 212 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 HIST2H3PS2Q5TEC6 136 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 PRAMEF6Q5VXH4 476 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 SMARCD3Q6STE5 483 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 DPY19L2P2Q6ZN68 376 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 HIST2H3AQ71DI3 136 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 OR6V1Q8N148 313 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 OR52E2Q8NGJ4 325 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 OR13G1Q8NGZ3 307 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 SGMS2Q8NHU3 365 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 FANK1Q8TC84 345 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 ZMYND19Q96E35 227 aaPredicted RBP9.68□□□□□ -0.86
USP4-204ENST00000416417 FUZQ9BT04 418 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 SSBP3Q9BWW4 388 aaPredicted RBP9.68□□□□□ -0.86
USP4-204ENST00000416417 CCDC134Q9H6E4 229 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 RPRD1BQ9NQG5 326 aaKnown RBP9.68□□□□□ -0.86
USP4-204ENST00000416417 TNFRSF19Q9NS68 423 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 UFSP2Q9NUQ7 469 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 ADA2Q9NZK5 511 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 TRAV40A0A0B4J280 105 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 C5orf63A6NC05 138 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 F5H5K5 113 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 CCDC22O60826 627 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 TXNDC12O95881 172 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 HIST1H1CP16403 213 aaKnown RBP9.67□□□□□ -0.86
USP4-204ENST00000416417 RHCEP18577 417 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 TUBG1P23258 451 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 FPR3P25089 353 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 RGS6P49758 472 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 GNB2P62879 340 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 SPIBQ01892 262 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 PAX8Q06710 450 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 SLC35F1Q5T1Q4 408 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 SLC27A4Q6P1M0 643 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 BRD3OSQ6XYD6 125 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 ADCK1Q86TW2 530 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 PARP8Q8N3A8 854 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 SDR9C7Q8NEX9 313 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 GJC3Q8NFK1 279 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 OR5L1Q8NGL2 311 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 APOBEC3DQ96AK3 386 aaPredicted RBP9.67□□□□□ -0.86
USP4-204ENST00000416417 COG8Q96MW5 612 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 PITX2Q99697 317 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 COQ7Q99807 217 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 ELAC2Q9BQ52 826 aaKnown RBP9.67□□□□□ -0.86
USP4-204ENST00000416417 SLC30A2Q9BRI3 323 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 ZNF747Q9BV97 191 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 CDADC1Q9BWV3 514 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 OR52D1Q9H346 318 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 TUBG2Q9NRH3 451 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 DCAF13Q9NV06 445 aaKnown RBP9.67□□□□□ -0.86
USP4-204ENST00000416417 ABCD2Q9UBJ2 740 aa9.67□□□□□ -0.86
USP4-204ENST00000416417 IGHV2-70DA0A0C4DH43 119 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 IQCF6A8MYZ5 107 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 HLA-DQA2P01906 255 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 ACSM4P0C7M7 580 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 PSKH1P11801 424 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 OMGP23515 440 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 CRABP1P29762 137 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 PYCR1P32322 319 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 MDH1P40925 334 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 SRP9P49458 86 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 COX10Q12887 443 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 FOXL1Q12952 345 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 KRT72Q14CN4 511 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 SLC9A3R2Q15599 337 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 MPPED2Q15777 294 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 RFX4Q33E94 735 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 SLC18B1Q6NT16 456 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 LYPD4Q6UWN0 246 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 HACD2Q6Y1H2 254 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 MUC20Q8N307 709 aaPredicted RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 BOLLQ8N9W6 283 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 SLC26A10Q8NG04 563 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 ZNRF4Q8WWF5 429 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 SLCO4A1Q96BD0 722 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 DHRS1Q96LJ7 313 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 IFT27Q9BW83 186 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 FAM107BQ9H098 131 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 HDHD2Q9H0R4 259 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 UNKLQ9H9P5 680 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 TMEM100Q9NV29 134 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 LRCH1Q9Y2L9 728 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 OR6C68A6NDL8 312 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 TVP23AA6NH52 213 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 FAM20BO75063 409 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 GADD45GO95257 159 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 RENP00797 406 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 LCATP04180 440 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 PITPNBP48739 271 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 TRAP1Q12931 704 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 MAB21L1Q13394 359 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 GK2Q14410 553 aaPredicted RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 ZNF404Q494X3 552 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 DNM1P34Q6PK57 102 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms