RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 MEDAGQ5VYS4 303 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 KCTD18Q6PI47 426 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-206ENST00000414829 LYPD4Q6UWN0 246 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 COLCA1Q6ZS62 124 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF555Q8NEP9 628 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 ST7LQ8TDW4 575 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 ZNRF4Q8WWF5 429 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 IL4I1Q96RQ9 567 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 TEAD3Q99594 435 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 OR2J1Q9GZK6 312 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 CENPMQ9NSP4 180 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 SMPD3Q9NY59 655 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-206ENST00000414829 TAAR3PQ9P1P4 343 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIMS1-206ENST00000414829 NOP16Q9Y3C1 178 aaKnown RBP12.56□□□□□ -0.4
LIMS1-206ENST00000414829 MYO9AB2RTY4 2548 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 PDZD2O15018 2839 aa12.56□□□□□ -0.4
LIMS1-206ENST00000414829 TMEM129A0AVI4 362 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 H0YHG0 523 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 NDUFS8O00217 210 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 LCATP04180 440 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 ADRA2AP08913 450 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 DBHP09172 617 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 H2BFMP0C1H6 154 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 CFL1P23528 166 aaKnown RBP12.55□□□□□ -0.4
LIMS1-206ENST00000414829 HTR1FP30939 366 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 NAA10P41227 235 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-206ENST00000414829 MRPS11P82912 194 aaKnown RBP12.55□□□□□ -0.4
LIMS1-206ENST00000414829 SPATA46Q5T0L3 261 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 DEGS2Q6QHC5 323 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 FBXW12Q6X9E4 464 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF540Q8NDQ6 660 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 BBS1Q8NFJ9 593 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 OR52H1Q8NGJ2 320 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 Q96MF0 132 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 SORCS2Q96PQ0 1159 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 MYCBPQ99417 103 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-206ENST00000414829 APOL4Q9BPW4 351 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 RHNO1Q9BSD3 238 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 ABHD6Q9BV23 337 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 NKIRAS2Q9NYR9 191 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 ZDHHC8Q9ULC8 765 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 FZR1Q9UM11 496 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 GMPPBQ9Y5P6 360 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 DSCAMO60469 2012 aa12.55□□□□□ -0.4
LIMS1-206ENST00000414829 CCDC182A6NF36 153 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 XRCC2O43543 280 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 SSX4O60224 188 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 SELENOFO60613 162 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 NGFP01138 241 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 FOSL1P15407 271 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 KITLGP21583 273 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 TNFSF4P23510 183 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 OPRL1P41146 370 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 RPS27P42677 84 aaKnown RBP12.54□□□□□ -0.4
LIMS1-206ENST00000414829 ALDH3B1P43353 468 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 PDLIM4P50479 330 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF81P51508 661 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 ERVS71-1P61550 626 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 SNRPGP62308 76 aaKnown RBP12.54□□□□□ -0.4
LIMS1-206ENST00000414829 SLC25A30Q5SVS4 291 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 MRPL21Q7Z2W9 205 aaKnown RBP12.54□□□□□ -0.4
LIMS1-206ENST00000414829 KRTAP1-3Q8IUG1 177 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF283Q8N7M2 679 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 WFDC11Q8NEX6 87 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 OR10S1Q8NGN2 331 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 THEM6Q8WUY1 208 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 SLC7A6Q92536 515 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 ITFG2Q969R8 447 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 HAVCR1Q96D42 359 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 Q96MT0 163 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 MROQ9BYG7 248 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 RGCCQ9H4X1 137 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF391Q9UJN7 358 aa12.54□□□□□ -0.4
LIMS1-206ENST00000414829 LOC390937A0A1W2PQ73 354 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 C17orf100A8MU93 164 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ANKRD65E5RJM6 399 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF670-ZNF695F2Z2N8 137 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 CASQ2O14958 399 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ZNF254O75437 659 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 SLC25A16P16260 332 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ALOX5APP20292 161 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ATP6V1E1P36543 226 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 POLR2IP36954 125 aaKnown RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ELF3P78545 371 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 DBPQ10586 325 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 SNCBQ16143 134 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 MSMPQ1L6U9 139 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 ZIK1Q3SY52 487 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 KRT77Q7Z794 578 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 FAM168AQ92567 244 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 MRPL48Q96GC5 212 aaKnown RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 MBOAT4Q96T53 435 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 PIMREGQ9BSJ6 248 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 EGLN1Q9GZT9 426 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 VCX3BQ9H321 246 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 CLN6Q9NWW5 311 aa12.53□□□□□ -0.4
LIMS1-206ENST00000414829 PURGQ9UJV8 347 aaKnown RBP12.53□□□□□ -0.4
LIMS1-206ENST00000414829 STARD10Q9Y365 291 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms