RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ZNF735P0CB33 412 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 QRFPP83859 136 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 BTN1A1Q13410 526 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 RBMS2Q15434 407 aaKnown RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 TMEM176BQ3YBM2 270 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 DNM1P34Q6PK57 102 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 MAML2Q8IZL2 1156 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 GABRG1Q8N1C3 465 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 OR2A7Q96R45 310 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 DEFB126Q9BYW3 111 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 PNRC2Q9NPJ4 139 aaKnown RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 GLTPQ9NZD2 209 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 CKLFQ9UBR5 152 aa11.87□□□□□ -0.51
CCDC3-202ENST00000378839 GDF2Q9UK05 429 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-202ENST00000378839 PLSCR5A0PG75 271 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 RER1O15258 196 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 CFIP05156 583 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 CSF1P09603 554 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 FGF5P12034 268 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 CLDN6P56747 220 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 PMPCAQ10713 525 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 DMRTC1Q5HYR2 192 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 PHYHD1Q5SRE7 291 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 STEAP1BQ6NZ63 245 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 ACBD4Q8NC06 268 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 NOXO1Q8NFA2 376 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 OR4S1Q8NGB4 309 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 OR6M1Q8NGM8 313 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 OR6N1Q8NGY5 312 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 C15orf40Q8WUR7 153 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 SPACA5Q96QH8 159 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 SEC61A2Q9H9S3 476 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 CDV3Q9UKY7 258 aaKnown RBP11.86□□□□□ -0.51
CCDC3-202ENST00000378839 ARID1AO14497 2285 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 IGHV1-45A0A0A0MS14 117 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 RPS10-NUDT3A0A1W2PQS6 291 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 TMEM235A6NFC5 223 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 CREBL2O60519 120 aaPredicted RBP11.86□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF17P17021 662 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 MSX1P28360 303 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 PSMA6P60900 246 aaKnown RBP11.86□□□□□ -0.51
CCDC3-202ENST00000378839 RSPO4Q2I0M5 234 aaPredicted RBP11.86□□□□□ -0.51
CCDC3-202ENST00000378839 C3orf33Q6P1S2 294 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 SLC25A47Q6Q0C1 308 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 DEGS2Q6QHC5 323 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 ADGRE4PQ86SQ3 457 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 UEVLDQ8IX04 471 aa11.86□□□□□ -0.51
CCDC3-202ENST00000378839 SIGLEC5O15389 551 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 PDGFAP04085 211 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 RLN1P04808 185 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 AKAIN1P0CW23 69 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 SIGLEC14Q08ET2 396 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 EXOSC2Q13868 293 aaKnown RBP11.85□□□□□ -0.51
CCDC3-202ENST00000378839 HIST3H3Q16695 136 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.85□□□□□ -0.51
CCDC3-202ENST00000378839 OR51E1Q8TCB6 317 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 NKD1Q969G9 470 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 FAM46BQ96A09 425 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 IMMP1LQ96LU5 166 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 GNRHR2Q96P88 292 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 MS4A7Q9GZW8 240 aaPredicted RBP11.85□□□□□ -0.51
CCDC3-202ENST00000378839 PTTG3PQ9NZH4 202 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 LOC102723996A0A087X1L8 192 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 SNRPGP15A8MWD9 76 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 CCL3P10147 92 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 COX6A1P12074 109 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 CLRN1P58418 232 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 TSPAN5P62079 268 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 GRK1Q15835 563 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 THEM4Q5T1C6 240 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF704Q6ZNC4 412 aaPredicted RBP11.85□□□□□ -0.51
CCDC3-202ENST00000378839 MEIOBQ8N635 442 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 SLC39A7Q92504 469 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 THRSPQ92748 146 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 MRGPRFQ96AM1 343 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 SDHAF3Q9NRP4 125 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 ASH2LQ9UBL3 628 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 IGHV3-15A0A0B4J1V0 119 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 RAB27BO00194 218 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 UBCP0CG48 685 aaKnown RBP11.85□□□□□ -0.51
CCDC3-202ENST00000378839 ABOP16442 354 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 ESCO2Q56NI9 601 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF468Q5VIY5 522 aaPredicted RBP11.85□□□□□ -0.51
CCDC3-202ENST00000378839 TMEM244Q5VVB8 128 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 ZNF529Q6P280 563 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 NAA40Q86UY6 237 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 SLC22A8Q8TCC7 542 aa11.85□□□□□ -0.51
CCDC3-202ENST00000378839 POM121CA8CG34 1229 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 D6RAR5 112 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 ITGB2P05107 769 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 LPLP06858 475 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 ICAM2P13598 275 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 TOMM20Q15388 145 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 ESX1Q8N693 406 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 GVQW1Q8N7I0 195 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 ZBTB44Q8NCP5 570 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 C1orf198Q9H425 327 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 B3GNT2Q9NY97 397 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 HS3ST3B1Q9Y662 390 aa11.84□□□□□ -0.51
CCDC3-202ENST00000378839 C19orf67A6NJJ6 358 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms