RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HTR3BO95264 441 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 ZNF735P0CB33 412 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 UBBP0CG47 229 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 UBCP0CG48 685 aaKnown RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 NAT2P11245 290 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 ABOP16442 354 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 FBLP22087 321 aaKnown RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 CRABP1P29762 137 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 NPY4RP50391 375 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 BIDP55957 195 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 RPS27AP62979 156 aaKnown RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 UBA52P62987 128 aaKnown RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 PTCRAQ6ISU1 281 aaPredicted RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 JMJD6Q6NYC1 403 aaPredicted RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 DCUN1D4Q92564 292 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 GPER1Q99527 375 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 TSNAXQ99598 290 aaKnown RBP10.84□□□□□ -0.67
CLIP3-201ENST00000360535 TWSG1Q9GZX9 223 aa10.84□□□□□ -0.67
CLIP3-201ENST00000360535 GPR31O00270 319 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 AQP8O94778 261 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 PGAM2P15259 253 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 SLC26A5P58743 744 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 HSD17B13Q7Z5P4 300 aaPredicted RBP10.83□□□□□ -0.67
CLIP3-201ENST00000360535 SLC26A10Q8NG04 563 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 OR1L3Q8NH93 324 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 OR51E1Q8TCB6 317 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 ADAMTS18Q8TE60 1221 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 DAZLQ92904 295 aaKnown RBP10.83□□□□□ -0.67
CLIP3-201ENST00000360535 PELOQ9BRX2 385 aaKnown RBP10.83□□□□□ -0.67
CLIP3-201ENST00000360535 GSKIPQ9P0R6 139 aa10.83□□□□□ -0.67
CLIP3-201ENST00000360535 ATG2AQ2TAZ0 1938 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 A0A0D9SG52 128 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 A0A1B0GW55 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 WIPF3A6NGB9 483 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 IGKV3-11P04433 115 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4L2P0CJ85 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4L3P0CJ86 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4L4P0CJ87 422 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4L5P0CJ88 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4L6P0CJ89 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4L7P0CJ90 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 FOLR1P15328 257 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 BDKRB2P30411 391 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 FAM166AQ6J272 317 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM200AQ86VY9 491 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 MRPL38Q96DV4 380 aaKnown RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 PHB2Q99623 299 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 LDAHQ9H6V9 325 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF304Q9HCX3 659 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 DUX4Q9UBX2 424 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 PCDHB10Q9UN67 800 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 FRYLO94915 3013 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 TLCD2A6NGC4 264 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 ALG1L2C9J202 215 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF208O43345 1280 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 IFI6P09912 130 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 CNR1P21554 472 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 SERPINF1P36955 418 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 FGL1Q08830 312 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 SNTB1Q13884 538 aaKnown RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 ELAVL1Q15717 326 aaKnown RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 MPPED2Q15777 294 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 RSPO4Q2I0M5 234 aaPredicted RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 TFAP2EQ6VUC0 442 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 CCNL2Q96S94 520 aaPredicted RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 CDCA3Q99618 268 aaPredicted RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 ELL3Q9HB65 397 aaPredicted RBP10.83□□□□□ -0.68
CLIP3-201ENST00000360535 G6PC2Q9NQR9 355 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 RASL12Q9NYN1 266 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 CSAG2Q9Y5P2 127 aa10.83□□□□□ -0.68
CLIP3-201ENST00000360535 C9orf170A2RU37 121 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 METTL12A8MUP2 240 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 RAB27BO00194 218 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 SDCBPO00560 298 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF354AO60765 605 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GUSBP08236 651 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GIMD1P0DJR0 217 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 EMP2P54851 167 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 FOXK1P85037 733 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 INPP5JQ15735 1006 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GRINAQ7Z429 371 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GKN2Q86XP6 184 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 TMED6Q8WW62 240 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 VN1R1Q9GZP7 353 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 SLC25A32Q9H2D1 315 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 TNFSF18Q9UNG2 199 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 LHX6Q9UPM6 363 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 SLC5A6Q9Y289 635 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 KCNK7Q9Y2U2 307 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 A0A1B0GTQ1 180 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 MEGF11A6BM72 1044 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 RNF222A6NCQ9 220 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM127O75204 238 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ADAP1O75689 374 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 DXOO77932 396 aaKnown RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 MT-ATP6P00846 226 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 HCKP08631 526 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF20P17024 532 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GABRA4P48169 554 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 CSNK1EP49674 416 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms