RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SLC10A2Q12908 348 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 MMDQ15546 238 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 MIDNQ504T8 468 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 MEDAGQ5VYS4 303 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 OR51L1Q8NGJ5 315 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 GCM1Q9NP62 436 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SLC25A10Q9UBX3 287 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 A0A1B0GWA3 101 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 C5orf51A6NDU8 294 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 UBCP0CG48 685 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 VAMP1P23763 118 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF91Q05481 1191 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 SAXO2Q658L1 398 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 FAM198BQ6UWH4 519 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 COMTD1Q86VU5 262 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF584Q8IVC4 421 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 PGBD5Q8N414 524 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 KRTCAP2Q8N6L1 136 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 NSUN5Q96P11 429 aaKnown RBP7.48□□□□□ -1.21
HMGB1-203ENST00000341423 DUX5Q96PT3 197 aa7.48□□□□□ -1.21
HMGB1-203ENST00000341423 UBR3Q6ZT12 1888 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 IGKV3-7A0A075B6H7 116 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 TRBV2A0A0J9YWF9 115 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 NTN3O00634 580 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 FRS3O43559 492 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ZCCHC18P0CG32 403 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 AGAP20933 346 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 PYCR1P32322 319 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 RPL31P62899 125 aaKnown RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 TRAF3Q13114 568 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 STEAP1BQ6NZ63 245 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ZFP41Q8N8Y5 198 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 CCDC107Q8WV48 283 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 PBDC1Q9BVG4 233 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 SEBOXQ9HB31 216 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 DKK4Q9UBT3 224 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 BTNL2Q9UIR0 455 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ZNFX1Q9P2E3 1918 aaKnown RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 IGHV3OR16-12A0A075B7B8 117 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 LEUTXA8MZ59 168 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 BHMG1C9JSJ3 638 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 FBXO24O75426 580 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 SCO1O75880 301 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 COX6A1P12074 109 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 RAB14P61106 215 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 AKR1C1Q04828 323 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ACSF3Q4G176 576 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 CMPK2Q5EBM0 449 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 PABPC1L2AQ5JQF8 200 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 SFRP5Q5T4F7 317 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 EBLN2Q6P2I7 272 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 WFDC3Q8IUB2 231 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 TGIF2LYQ8IUE0 185 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 TGIF2LXQ8IUE1 241 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 WDSUB1Q8N9V3 476 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ADAMTS17Q8TE56 1095 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 SCP2D1Q9UJQ7 156 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 C2CD3Q4AC94 2353 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 A0A1W2PNV4 684 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 BET1O15155 118 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 SPRY1O43609 319 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 PSPNO60542 156 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 CD14P08571 375 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 HTN1P15515 57 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 RHCEP18577 417 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 HTR1DP28221 377 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 THBS4P35443 961 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 PSMA6P60900 246 aaKnown RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 AQP6Q13520 282 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 TRAT1Q6PIZ9 186 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 VRK3Q8IV63 474 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF695Q8IW36 515 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 CBR4Q8N4T8 237 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 AMER2Q8N7J2 671 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 OR51A2Q8NGJ7 313 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 OR5AK2Q8NH90 309 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 GPR148Q8TDV2 347 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 TMEM186Q96B77 213 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ACKR4Q9NPB9 350 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 HEYLQ9NQ87 328 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 HILPDAQ9Y5L2 63 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 MYO18AQ92614 2054 aaKnown RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 MYH13Q9UKX3 1938 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 NAV1Q8NEY1 1877 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 A0A1B0GVC2 190 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 ACP2P11117 423 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 IGFBP6P24592 240 aaPredicted RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 MDH1P40925 334 aaKnown RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 GABRA4P48169 554 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 SNRPGP62308 76 aaKnown RBP7.47□□□□□ -1.21
HMGB1-203ENST00000341423 OR1F12Q8NHA8 337 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 COX14Q96I36 57 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 KCNA7Q96RP8 456 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 PKP2Q99959 881 aa7.47□□□□□ -1.21
HMGB1-203ENST00000341423 IFNA10P01566 189 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 MYF6P23409 242 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 CD40P25942 277 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 CD68P34810 354 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-203ENST00000341423 CX3CR1P49238 355 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 FXYD6P3P58550 94 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms