RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 F5H5K5 113 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 CST2P09228 141 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 FSTP19883 344 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 ANOS1P23352 680 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 TAB1Q15750 504 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 UBE2NLQ5JXB2 153 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 FAM57BQ71RH2 274 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 SLC22A24Q8N4F4 322 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 SLC7A10Q9NS82 523 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 TBC1D24Q9ULP9 559 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 FOXJ3Q9UPW0 622 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 A0A1B0GVI7 797 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 LINC00854A0A1B0GVQ3 168 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 IGHG3P01860 377 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 YES1P07947 543 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 SLC6A9P48067 706 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 RIN1Q13671 783 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 GFOD2Q3B7J2 385 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 ABHD12BQ7Z5M8 362 aaPredicted RBP11.76□□□□□ -0.53
HMGB1-202ENST00000339872 SLC7A6Q92536 515 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 LINC00470Q9BZP3 86 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 RNF122Q9H9V4 155 aa11.76□□□□□ -0.53
HMGB1-202ENST00000339872 FRYQ5TBA9 3013 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 DCHS1Q96JQ0 3298 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 SLC22A20A6NK97 555 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 SGCEO43556 437 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 TMEM127O75204 238 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 TGM6O95932 706 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 PTTG1O95997 202 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 IGFBP3P17936 291 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-202ENST00000339872 PITPNBP48739 271 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 SCN1BQ07699 218 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF169Q14929 603 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-202ENST00000339872 TRIQKQ629K1 86 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF813Q6ZN06 617 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 PLPP7Q8NBV4 271 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 APH1AQ96BI3 265 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 MRI1Q9BV20 369 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 SP140LQ9H930 580 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF275Q9NSD4 429 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-202ENST00000339872 FAIMQ9NVQ4 179 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF319Q9P2F9 582 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 OR5V1Q9UGF6 321 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 PCDHGA9Q9Y5G4 932 aaKnown RBP11.75□□□□□ -0.53
HMGB1-202ENST00000339872 A0A1B0GTI1 187 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 PATE4P0C8F1 98 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 CALCBP10092 127 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF32P17041 273 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 CTSSP25774 331 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 SCRN3Q0VDG4 424 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 RAB35Q15286 201 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 ARHGAP21Q5T5U3 1957 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 C9orf135Q5VTT2 229 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 SLC16A14Q7RTX9 510 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 NAA40Q86UY6 237 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 OR51A2Q8NGJ7 313 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 FGGYQ96C11 551 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 PGAM5Q96HS1 289 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 NKX3-1Q99801 234 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-202ENST00000339872 HDHD2Q9H0R4 259 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 GPR84Q9NQS5 396 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 STEAP1Q9UHE8 339 aa11.75□□□□□ -0.53
HMGB1-202ENST00000339872 FREM1Q5H8C1 2179 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF587BE7ETH6 402 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 M0R135 149 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ADRB1P08588 477 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 DBHP09172 617 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 GNALP38405 381 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 SPOCK1Q08629 439 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF774Q6NX45 483 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 PRSS45Q7RTY3 260 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 NUFIP2Q7Z417 695 aaKnown RBP11.74□□□□□ -0.53
HMGB1-202ENST00000339872 CMTM4Q8IZR5 234 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 UBE2J2Q8N2K1 259 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 OR1J2Q8NGS2 313 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 SETD6Q8TBK2 473 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 SPTSSAQ969W0 71 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 SLC25A38Q96DW6 304 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF799Q96GE5 643 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 FAM71F1Q96KD3 344 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-202ENST00000339872 WACQ9BTA9 647 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 UPB1Q9UBR1 384 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 OR6C65A6NJZ3 312 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ZNHIT1O43257 154 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 WISP2O76076 250 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 FARS2O95363 451 aaKnown RBP11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ITGA5P08648 1049 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 OTX1P32242 354 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-202ENST00000339872 RSPO1Q2MKA7 263 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-202ENST00000339872 IGFL3Q6UXB1 125 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 SKA3Q8IX90 412 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF100Q8IYN0 542 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 AKR7LQ8NHP1 331 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 ADAT3Q96EY9 351 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-202ENST00000339872 CMTM3Q96MX0 182 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 SOX7Q9BT81 388 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 PRDM14Q9GZV8 571 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 C12orf49Q9H741 205 aa11.74□□□□□ -0.53
HMGB1-202ENST00000339872 C5orf63A6NC05 138 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 TTLL8A6PVC2 850 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms