RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 GFOD2Q3B7J2 385 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ZNF829Q3KNS6 432 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 LINC00303Q3SY05 128 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ACSF3Q4G176 576 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 PRR30Q53SZ7 412 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ELFN2Q5R3F8 820 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SFXN4Q6P4A7 337 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PAMR1Q6UXH9 720 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 C3P1Q6ZMU1 363 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SEM1Q6ZVN7 128 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 FAM57BQ71RH2 274 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SLC16A14Q7RTX9 510 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PRSS45Q7RTY3 260 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CCDC190Q86UF4 302 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ELMOD2Q8IZ81 293 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 RPRMLQ8N4K4 120 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CISD2Q8N5K1 135 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ZNF433Q8N7K0 673 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ZNF283Q8N7M2 679 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 DTX3Q8N9I9 347 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 GJC3Q8NFK1 279 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 OR8B12Q8NGG6 310 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 WNT5BQ9H1J7 359 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PLGRKTQ9HBL7 147 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 NOX3Q9HBY0 568 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CRNNQ9UBG3 495 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 UPB1Q9UBR1 384 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PEX16Q9Y5Y5 336 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 A0A1B0GTI1 187 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 RPL36A-HNRNPH2H7BZ11 118 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SGCEO43556 437 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SYNGR3O43761 229 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 HPGDSO60760 199 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SS18L1O75177 396 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 IL18BPO95998 194 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 MAS1P04201 325 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ANXA2P07355 339 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ITGA5P08648 1049 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 MMP7P09237 267 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 EPXP11678 715 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 FCGR2AP12318 317 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SNRPBP14678 240 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ABOP16442 354 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 DCTDP32321 178 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SLC6A9P48067 706 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PRSS12P56730 875 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CLDN12P56749 244 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 IFITM3Q01628 133 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ZNF846Q147U1 533 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 GUSBP1Q15486 140 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 XP32Q5T750 250 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 HES5Q5TA89 166 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 RTL6Q6ICC9 239 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 RPUSD3Q6P087 351 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 VWA1Q6PCB0 445 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 STAC2Q6ZMT1 411 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 LINC00299Q6ZSB3 139 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 LRRTM1Q86UE6 522 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 TPRA1Q86W33 373 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PARP16Q8N5Y8 322 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CNEP1R1Q8N9A8 125 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 OR13C3Q8NGS6 347 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 OR51E1Q8TCB6 317 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ASB5Q8WWX0 329 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 BORCS5Q969J3 196 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 GMPPAQ96IJ6 420 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 GPR137Q96N19 417 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 KCNJ15Q99712 375 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 OR2H1Q9GZK4 316 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 HMG20AQ9NP66 347 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 TAS2R4Q9NYW5 299 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 MALT1Q9UDY8 824 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 NUFIP1Q9UHK0 495 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 DHDHQ9UQ10 334 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CMAHPQ9Y471 501 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 NOTOA8MTQ0 251 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 M0R135 149 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 TOXO94900 526 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CRYABP02511 175 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ISG15P05161 165 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 TPOP07202 933 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ACHEP22303 614 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 CRYGSP22914 178 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 AZGP1P25311 298 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 MAPK3P27361 379 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 OTX1P32242 354 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 KIR2DL2P43627 348 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 OR3A2P47893 321 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 HTR5AP47898 357 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 GRB2P62993 217 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 DYNC1I2Q13409 638 aaKnown RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 RAB35Q15286 201 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 TSC22D1Q15714 1073 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 SNAI3Q3KNW1 292 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 HIKESHIQ53FT3 197 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 DMRTC1Q5HYR2 192 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 PABPC1L2AQ5JQF8 200 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 FBXW9Q5XUX1 488 aa3.62□□□□□ -1.83
MCF2-201ENST00000338585 ZNF324BQ6AW86 544 aaPredicted RBP3.62□□□□□ -1.83
MCF2-201ENST00000338585 ZNF544Q6NX49 715 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms