RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SCRN3Q0VDG4 424 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 ASPHD2Q6ICH7 369 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 GMPPAQ96IJ6 420 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-202ENST00000338045 SPOCK3Q9BQ16 436 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 HDHD2Q9H0R4 259 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 PLEK2Q9NYT0 353 aa13.57□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF587BE7ETH6 402 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 H3BSH0 61 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 HPGDSO60760 199 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 SS18L1O75177 396 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-202ENST00000338045 CD2P06729 351 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 SLC2A2P11168 524 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-202ENST00000338045 FSTP19883 344 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 IFITM3Q01628 133 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 RAB35Q15286 201 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 TBR1Q16650 682 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 PLEKHN1Q494U1 663 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-202ENST00000338045 ABHD17AQ96GS6 310 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 SOSTQ9BQB4 213 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 BRD7Q9NPI1 651 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 ABRACLQ9P1F3 81 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 V9GY05 133 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 CEP295Q9C0D2 2601 aa13.56□□□□□ -0.24
LIMS1-202ENST00000338045 IFITM5A6NNB3 132 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 AIPO00170 330 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 P2RY10O00398 339 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SGCEO43556 437 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SYNGR3O43761 229 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF32P17041 273 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 CRYGSP22914 178 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 PCBD1P61457 104 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 GUSBP1Q15486 140 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF813Q6ZN06 617 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SKA3Q8IX90 412 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF100Q8IYN0 542 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 OR8B12Q8NGG6 310 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 DIRAS2Q96HU8 199 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SDHCQ99643 169 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-202ENST00000338045 TBCCD1Q9NVR7 557 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 MALT1Q9UDY8 824 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 FOXJ3Q9UPW0 622 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 FREM1Q5H8C1 2179 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 A0A1B0GTI1 187 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 TTLL8A6PVC2 850 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 DOK2O60496 412 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SLC19A2O60779 497 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 UPK1BO75841 260 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 FARS2O95363 451 aaKnown RBP13.55□□□□□ -0.24
LIMS1-202ENST00000338045 CRYABP02511 175 aaKnown RBP13.55□□□□□ -0.24
LIMS1-202ENST00000338045 APOC1P02654 83 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 MMP7P09237 267 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-202ENST00000338045 IGFBP3P17936 291 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-202ENST00000338045 CFPP27918 469 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 EVX1P49640 407 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ARF1P84077 181 aaKnown RBP13.55□□□□□ -0.24
LIMS1-202ENST00000338045 GALK2Q01415 458 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ECH1Q13011 328 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF79Q15937 498 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 KRTAP27-1Q3LI81 207 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SLC16A14Q7RTX9 510 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 P4HA3Q7Z4N8 544 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF283Q8N7M2 679 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 SLC17A5Q9NRA2 495 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF319Q9P2F9 582 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 UPB1Q9UBR1 384 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 ADAM30Q9UKF2 790 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 TIMM10BQ9Y5J6 103 aa13.55□□□□□ -0.24
LIMS1-202ENST00000338045 OR6C6A6NF89 314 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 AHRRA9YTQ3 701 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 PAHP00439 452 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 IGLV3-1P01715 115 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 SLC2A1P11166 492 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 CCL1P22362 96 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 OR3A2P47893 321 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 UCNP55089 124 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 PSG4Q00888 419 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 METAP1DQ6UB28 335 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-202ENST00000338045 SNX29P2Q8IUI4 249 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF433Q8N7K0 673 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-202ENST00000338045 OR13C3Q8NGS6 347 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 FGFBP3Q8TAT2 258 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 TRMT10AQ8TBZ6 339 aaKnown RBP13.54□□□□□ -0.24
LIMS1-202ENST00000338045 TRIB1Q96RU8 372 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 CCDC32Q9BV29 185 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 OR2H1Q9GZK4 316 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 OCEL1Q9H607 264 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF275Q9NSD4 429 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-202ENST00000338045 TP53TG5Q9Y2B4 290 aa13.54□□□□□ -0.24
LIMS1-202ENST00000338045 FABP12A6NFH5 140 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 M0R135 149 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ZNHIT1O43257 154 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 SYT7O43581 403 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 CD37P11049 281 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ANOS1P23352 680 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 FOXG1P55316 489 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-202ENST00000338045 TMPRSS3P57727 454 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF181Q2M3W8 571 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 FBXW9Q5XUX1 488 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 CNIH2Q6PI25 160 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ABHD12BQ7Z5M8 362 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms