RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZBTB49Q6ZSB9 765 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 NRBF2Q96F24 287 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 MAP6Q96JE9 813 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 COQ7Q99807 217 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 PIMREGQ9BSJ6 248 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 BPESC1Q9GZL8 116 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 HDHD2Q9H0R4 259 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 HINT3Q9NQE9 182 aaKnown RBP13.5□□□□□ -0.25
CLN3-201ENST00000333496 FAM183AA6NL82 134 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 ZNF23P17027 643 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 SPI1P17947 270 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 COL8A2P25067 703 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 POU1F1P28069 291 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 GRK5P34947 590 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 ARHGDIAP52565 204 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 CDK5Q00535 292 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 PSG7Q13046 419 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 RIN1Q13671 783 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 GINS1Q14691 196 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 KRTAP27-1Q3LI81 207 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 ARL9Q6T311 187 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 SATL1Q86VE3 508 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 ZNF511Q8NB15 262 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 PTP4A1Q93096 173 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 DGCR14Q96DF8 476 aaKnown RBP13.5□□□□□ -0.25
CLN3-201ENST00000333496 SLC29A1Q99808 456 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 CDADC1Q9BWV3 514 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 ANKRD60Q9BZ19 345 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 MED20Q9H944 212 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 WDR76Q9H967 626 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 PTTG2Q9NZH5 202 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 GPR160Q9UJ42 338 aa13.5□□□□□ -0.25
CLN3-201ENST00000333496 ABCA2Q9BZC7 2435 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 IGHV4-61A0A0C4DH41 118 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 H3BSA7 217 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 IFNGP01579 166 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 ZNF3P17036 446 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 USF1P22415 310 aaPredicted RBP13.49□□□□□ -0.25
CLN3-201ENST00000333496 DAPP51397 102 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 CCL8P80075 99 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 TMEM249Q2WGJ8 235 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 SLC27A4Q6P1M0 643 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 FAHD1Q6P587 224 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 CBR4Q8N4T8 237 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 ATG16L2Q8NAA4 619 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 OR10S1Q8NGN2 331 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 OR2AJ1Q8NGZ0 328 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 OR5K1Q8NHB7 308 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 SNX33Q8WV41 574 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 YIPF5Q969M3 257 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 ZNF556Q9HAH1 456 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 HIVEP2P31629 2446 aa13.49□□□□□ -0.25
CLN3-201ENST00000333496 CUBNO60494 3623 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 DYSFO75923 2080 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 RIIAD1A6NNX1 92 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 TFAP2AP05549 437 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 ZNF823P16415 610 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 GGTLC2Q14390 218 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 MOGQ16653 247 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 PCK2Q16822 640 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 TMEM236Q5W0B7 351 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 NAA40Q86UY6 237 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 DCLRE1CQ96SD1 692 aaKnown RBP13.48□□□□□ -0.25
CLN3-201ENST00000333496 PITX2Q99697 317 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 ATF6BQ99941 703 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 NKIRAS2Q9NYR9 191 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 KCNG2Q9UJ96 466 aa13.48□□□□□ -0.25
CLN3-201ENST00000333496 ZSCAN5BA6NJL1 495 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 INAFM1C9JVW0 142 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 SURF4O15260 269 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 CD5LO43866 347 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 TUBG1P23258 451 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 FMO3P31513 532 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 COLCA1Q6ZS62 124 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 ZDHHC13Q8IUH4 622 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 ZNF540Q8NDQ6 660 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 RDH5Q92781 318 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 CMBLQ96DG6 245 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 TUBG2Q9NRH3 451 aa13.47□□□□□ -0.25
CLN3-201ENST00000333496 G3V2T6 193 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 J3QW42 95 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 EI24O14681 340 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 LILRA1O75019 489 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 RP2O75695 350 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 IGHV1-46P01743 117 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 ACSM4P0C7M7 580 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 RGS6P49758 472 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 ENTPD1P49961 510 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 ZNF81P51508 661 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 LSAMPQ13449 338 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 HLXQ14774 488 aaPredicted RBP13.46□□□□□ -0.25
CLN3-201ENST00000333496 PCGF3Q3KNV8 242 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 OR6K6Q8NGW6 343 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 HAVCR1Q96D42 359 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 POM121Q96HA1 1249 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 RBM38Q9H0Z9 239 aaKnown RBP13.46□□□□□ -0.25
CLN3-201ENST00000333496 CHODLQ9H9P2 273 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 SLC25A19Q9HC21 320 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 MSL2Q9HCI7 577 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 PURGQ9UJV8 347 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms