RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SGCBQ16585 318 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 EXOSC6Q5RKV6 272 aaKnown RBP9.44□□□□□ -0.9
COL3A1-202ENST00000317840 C16orf47Q6ZP98 133 aaPredicted RBP9.44□□□□□ -0.9
COL3A1-202ENST00000317840 TMEM229BQ8NBD8 167 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 OR2AJ1Q8NGZ0 328 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 CST11Q9H112 138 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 TXNIPQ9H3M7 391 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 SCPEP1Q9HB40 452 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 ZNF304Q9HCX3 659 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 KLRF1Q9NZS2 232 aa9.44□□□□□ -0.9
COL3A1-202ENST00000317840 BDKRB2P30411 391 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 POLR2HP52434 150 aaKnown RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 SLC37A1P57057 533 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 SCAND1P57086 179 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 INSM1Q01101 510 aaPredicted RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 MPPED2Q15777 294 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 FAM69BQ5VUD6 431 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 ACOT7LQ6ZUV0 252 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OVCH2Q7RTZ1 564 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OR2W3Q7Z3T1 314 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 BPIFCQ8NFQ6 507 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 TMEM234Q8WY98 164 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OR6C1Q96RD1 312 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 NUDT9Q9BW91 350 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 REG4Q9BYZ8 158 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 NKX6-2Q9C056 277 aaPredicted RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 SHARPINQ9H0F6 387 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 CHMP1AQ9HD42 196 aaPredicted RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OR2F2O95006 317 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 SFTPBP07988 381 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 CTRB1P17538 263 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 CAPZBP47756 277 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OR2F1Q13607 317 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 CTRB2Q6GPI1 263 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 ABHD12BQ7Z5M8 362 aaPredicted RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OR5M8Q8NGP6 311 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 PTPMT1Q8WUK0 201 aaPredicted RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 TMED6Q8WW62 240 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 ARPC5LQ9BPX5 153 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 TMEM231Q9H6L2 316 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 PCDHB10Q9UN67 800 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 BLACEA4D250 179 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 MT-ATP6P00846 226 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 PDGFBP01127 241 aaPredicted RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 HLA-DOBP13765 273 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 MST1P26927 711 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 SLC22A6Q4U2R8 563 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 PAN3Q58A45 887 aaKnown RBP9.43□□□□□ -0.9
COL3A1-202ENST00000317840 ZNF585AQ6P3V2 769 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 ANGPTL5Q86XS5 388 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 FAM219AQ8IW50 185 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 OR5D18Q8NGL1 313 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 MARC2Q969Z3 335 aa9.43□□□□□ -0.9
COL3A1-202ENST00000317840 A8MXK9 166 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 BET1O15155 118 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 LMX1BO60663 402 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 FGF2P09038 288 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 NPY4RP50391 375 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 DHODHQ02127 395 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 NR0B2Q15466 257 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 LRRC75AQ8NAA5 344 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 OR4D6Q8NGJ1 314 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 OR4K15Q8NH41 348 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 MARCH1Q8TCQ1 289 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 ST6GALNAC5Q9BVH7 336 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 RTN4RQ9BZR6 473 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 HRH4Q9H3N8 390 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 RARRES3Q9UL19 164 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 FAM74A7A6NL05 159 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 KNG1P01042 644 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 RAB3AP20336 220 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 SLC6A9P48067 706 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 HSD11B2P80365 405 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 FAM74A3Q4VXF1 159 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 SPEM1Q8N4L4 309 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 OR4K17Q8NGC6 315 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 OR5D14Q8NGL3 314 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 OR1S2Q8NGQ3 325 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 OR10R2Q8NGX6 335 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 BANF2Q9H503 90 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 MRPL22Q9NWU5 206 aaKnown RBP9.42□□□□□ -0.9
COL3A1-202ENST00000317840 CSAG2Q9Y5P2 127 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 R4GMQ9 66 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 TLCD2A6NGC4 264 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 SULT1C2O00338 296 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 BCL2L11O43521 198 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 TXNDC12O95881 172 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 TPT1P13693 172 aaKnown RBP9.42□□□□□ -0.9
COL3A1-202ENST00000317840 NAGAP17050 411 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 SERPINF1P36955 418 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 CD96P40200 585 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 PDSS1Q5T2R2 415 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 LPCAT3Q6P1A2 487 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 GRINAQ7Z429 371 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 LYG2Q86SG7 212 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 C8orf44Q96CB5 159 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 NECAB3Q96P71 396 aaPredicted RBP9.42□□□□□ -0.9
COL3A1-202ENST00000317840 RAB22AQ9UL26 194 aa9.42□□□□□ -0.9
COL3A1-202ENST00000317840 A0A1W2PPC1 479 aa9.41□□□□□ -0.9
COL3A1-202ENST00000317840 FRG2CA6NGY1 282 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms