RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 PLPPR2Q96GM1 343 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 BOD1Q96IK1 185 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 OCEL1Q9H607 264 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 BRD7Q9NPI1 651 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 MRPS18AQ9NVS2 196 aaKnown RBP15.76■□□□□ 0.11
HMGA1-201ENST00000311487 SLCO1C1Q9NYB5 712 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 ERGIC3Q9Y282 383 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 KLF2Q9Y5W3 355 aaPredicted RBP15.76■□□□□ 0.11
HMGA1-201ENST00000311487 CASKO14936 926 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 SYNGR3O43761 229 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 IGKV3-15P01624 115 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 SLC2A1P11166 492 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF85Q03923 595 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 PLP2Q04941 152 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 SCRN3Q0VDG4 424 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 TSTQ16762 297 aaKnown RBP15.76■□□□□ 0.11
HMGA1-201ENST00000311487 ELFN2Q5R3F8 820 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 SLC30A7Q8NEW0 376 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 PIK3IP1Q96FE7 263 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 RADILQ96JH8 1075 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 OPALINQ96PE5 141 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 HS3ST6Q96QI5 342 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 IKZF2Q9UKS7 526 aa15.76■□□□□ 0.11
HMGA1-201ENST00000311487 IQCMA0A1B0GVH7 501 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 DAPL1A0PJW8 107 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 J3QRE1 110 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 PLAUP00749 431 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 SERPINA5P05154 406 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 PPP3CBP16298 524 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 CALCRP30988 508 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 ETV1P50549 477 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 PRKXP51817 358 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 HGFACQ04756 655 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 TAF13Q15543 124 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 RSPO1Q2MKA7 263 aaPredicted RBP15.75■□□□□ 0.11
HMGA1-201ENST00000311487 TP53I3Q53FA7 332 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 KLHL22Q53GT1 634 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 TEX30Q5JUR7 227 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 ADAM5Q6NVV9 412 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF322Q6U7Q0 402 aaPredicted RBP15.75■□□□□ 0.11
HMGA1-201ENST00000311487 NANOGP1Q8N7R0 232 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 OR1F12Q8NHA8 337 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 DACH2Q96NX9 599 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 PSMG3-AS1Q96PY0 264 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 MND1Q9BWT6 205 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 OR51E2Q9H255 320 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 EXOGQ9Y2C4 368 aaKnown RBP15.75■□□□□ 0.11
HMGA1-201ENST00000311487 GRIP1Q9Y3R0 1128 aa15.75■□□□□ 0.11
HMGA1-201ENST00000311487 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-201ENST00000311487 ABCD4O14678 606 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 FAM157BP0CG42 384 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 EPXP11678 715 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 HOXB1P14653 301 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-201ENST00000311487 BMXP51813 675 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 HIST1H3AP68431 136 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 RAB40BQ12829 278 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 POU4F2Q12837 409 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 SSX1Q16384 188 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 DGUOKQ16854 277 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 HIST2H3PS2Q5TEC6 136 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 HIST2H3AQ71DI3 136 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 CCDC36Q8IYA8 594 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 NEUROG1Q92886 237 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 ATF6BQ99941 703 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 ISG20L2Q9H9L3 353 aaKnown RBP15.74■□□□□ 0.11
HMGA1-201ENST00000311487 FGF20Q9NP95 211 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-201ENST00000311487 PMF1-BGLAPU3KQ54 211 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 HECTD1Q9ULT8 2610 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 C5orf63A6NC05 138 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 CCRL2O00421 344 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 RPP14O95059 124 aaKnown RBP15.74■□□□□ 0.11
HMGA1-201ENST00000311487 CD40P25942 277 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 PRSS12P56730 875 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 RAB35Q15286 201 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 SPHARQ15513 63 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 KRT77Q7Z794 578 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 SYT9Q86SS6 491 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 DCSTAMPQ9H295 470 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 OBP2BQ9NPH6 170 aa15.74■□□□□ 0.11
HMGA1-201ENST00000311487 TACC2O95359 2948 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 IRGMA1A4Y4 181 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF670-ZNF695F2Z2N8 137 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 ATP6V1G2-DDX39BF2Z307 99 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 OR2T7P0C7T2 308 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 APLNRP35414 380 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 SLC6A9P48067 706 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 OR12D2P58182 307 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF829Q3KNS6 432 aaPredicted RBP15.73■□□□□ 0.11
HMGA1-201ENST00000311487 OR2G6Q5TZ20 316 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF101Q8IZC7 436 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 ACBD7Q8N6N7 88 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 OR2T27Q8NH04 317 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 SNX33Q8WV41 574 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 OR10A4Q9H209 315 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 ELOVL3Q9HB03 270 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 PLEKHB1Q9UF11 243 aaPredicted RBP15.73■□□□□ 0.11
HMGA1-201ENST00000311487 GNG8Q9UK08 70 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 LRP12Q9Y561 859 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 PTPN13Q12923 2485 aa15.73■□□□□ 0.11
HMGA1-201ENST00000311487 CSMD2Q7Z408 3487 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms