RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MMP16P51512 607 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 PRSS12P56730 875 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 ZMYND11Q15326 602 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 ZBTB46Q86UZ6 589 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 OR8G5Q8NG78 346 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 ZNF420Q8TAQ5 688 aaPredicted RBP16.45■□□□□ 0.22
LIME1-201ENST00000309546 NANPQ8TBE9 248 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 ZNF582Q96NG8 517 aaPredicted RBP16.45■□□□□ 0.22
LIME1-201ENST00000309546 ATF6BQ99941 703 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 LYVE1Q9Y5Y7 322 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 CDH10Q9Y6N8 788 aa16.45■□□□□ 0.22
LIME1-201ENST00000309546 IGHV3-64DA0A0J9YX35 117 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 H0YL77 283 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 IDH3BO43837 385 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 ZFP36P26651 326 aaKnown RBP16.44■□□□□ 0.22
LIME1-201ENST00000309546 SPATS1Q496A3 300 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 TMEM155Q4W5P6 130 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 SLC27A4Q6P1M0 643 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 CYB561A3Q8NBI2 242 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 OR13G1Q8NGZ3 307 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 MEGF10Q96KG7 1140 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 SIGLEC11Q96RL6 698 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 BTBD10Q9BSF8 475 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 HCAR1Q9BXC0 346 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 PATZ1Q9HBE1 687 aaKnown RBP16.44■□□□□ 0.22
LIME1-201ENST00000309546 GCM1Q9NP62 436 aa16.44■□□□□ 0.22
LIME1-201ENST00000309546 IQCF6A8MYZ5 107 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 KRT36O76013 467 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 ACSM4P0C7M7 580 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 PYCR1P32322 319 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 SRP9P49458 86 aaKnown RBP16.43■□□□□ 0.22
LIME1-201ENST00000309546 MNAT1P51948 309 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 SEC61A1P61619 476 aaKnown RBP16.43■□□□□ 0.22
LIME1-201ENST00000309546 ACTG1P63261 375 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 TRAP1Q12931 704 aaKnown RBP16.43■□□□□ 0.22
LIME1-201ENST00000309546 PPP1R8Q12972 351 aaKnown RBP16.43■□□□□ 0.22
LIME1-201ENST00000309546 RPL13AP3Q6NVV1 102 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 LRRC28Q86X40 367 aaPredicted RBP16.43■□□□□ 0.22
LIME1-201ENST00000309546 BPIFB2Q8N4F0 458 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 PROKR2Q8NFJ6 384 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 SLC6A7Q99884 636 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 PLA2G12AQ9BZM1 189 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 TBC1D23Q9NUY8 699 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 MRPL22Q9NWU5 206 aaKnown RBP16.43■□□□□ 0.22
LIME1-201ENST00000309546 ACTR3BQ9P1U1 418 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 CYB5R1Q9UHQ9 305 aa16.43■□□□□ 0.22
LIME1-201ENST00000309546 TVP23AA6NH52 213 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 B2RBV5 119 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 F5H5P2 479 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 TMEM178BH3BS89 294 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 MLNRO43193 412 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 CCNB2O95067 398 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 ZNF205O95201 554 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 CYB5R3P00387 301 aaPredicted RBP16.42■□□□□ 0.22
LIME1-201ENST00000309546 LCATP04180 440 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 ZNF823P16415 610 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 SELEP16581 610 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 GGT2P36268 569 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 MDH2P40926 338 aaKnown RBP16.42■□□□□ 0.22
LIME1-201ENST00000309546 RPS27P42677 84 aaKnown RBP16.42■□□□□ 0.22
LIME1-201ENST00000309546 HILS1P60008 231 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 ECH1Q13011 328 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 RSPO1Q2MKA7 263 aaPredicted RBP16.42■□□□□ 0.22
LIME1-201ENST00000309546 C12orf54Q6X4T0 127 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 MOGAT3Q86VF5 341 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 AQP11Q8NBQ7 271 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 C22orf15Q8WYQ4 148 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 SLC30A2Q9BRI3 323 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 C1QTNF5Q9BXJ0 243 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 PNRC2Q9NPJ4 139 aaKnown RBP16.42■□□□□ 0.22
LIME1-201ENST00000309546 MMP26Q9NRE1 261 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 OPN4Q9UHM6 478 aa16.42■□□□□ 0.22
LIME1-201ENST00000309546 BHLHE40O14503 412 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 GASTP01350 101 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 HLA-DPB1P04440 258 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 SLC6A9P48067 706 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 MALLQ13021 153 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 GK2Q14410 553 aaPredicted RBP16.41■□□□□ 0.22
LIME1-201ENST00000309546 KRTAP27-1Q3LI81 207 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 ESCO2Q56NI9 601 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 COLCA1Q6ZS62 124 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 NAA40Q86UY6 237 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 MUC20Q8N307 709 aaPredicted RBP16.41■□□□□ 0.22
LIME1-201ENST00000309546 LINC00471Q8N535 108 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 FITM2Q8N6M3 262 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 OR51L1Q8NGJ5 315 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 OR4C15Q8NGM1 316 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 OR8D4Q8NGM9 314 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 OR9Q1Q8NGQ5 310 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 ZFAND2BQ8WV99 257 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 SLCO4A1Q96BD0 722 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 MAP6Q96JE9 813 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 SUCNR1Q9BXA5 334 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 TMEM100Q9NV29 134 aa16.41■□□□□ 0.22
LIME1-201ENST00000309546 TCRBV5S2A0A599 114 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 CEACAM18A8MTB9 384 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 TRIM77I1YAP6 450 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 IFNL4K9M1U5 179 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 SOX14O95416 240 aa16.4■□□□□ 0.22
LIME1-201ENST00000309546 RPS2P15880 293 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms