RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TOMM34Q15785 309 aaPredicted RBP17.38■□□□□ 0.37
UPF1-201ENST00000262803 PXDC1Q5TGL8 231 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 TMEM211Q6ICI0 200 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 ETFBKMTQ8IXQ9 262 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 TUBG2Q9NRH3 451 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 STRAPQ9Y3F4 350 aaKnown RBP17.38■□□□□ 0.37
UPF1-201ENST00000262803 MN1Q10571 1320 aaPredicted RBP17.38■□□□□ 0.37
UPF1-201ENST00000262803 STMND1H3BQB6 276 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 NRASP01111 189 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 HCCSP53701 268 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 CDONQ4KMG0 1287 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 Q8IYB0 196 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 OR51S1Q8NGJ8 323 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 PATE1Q8WXA2 126 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 ZC3HAV1LQ96H79 300 aaKnown RBP17.38■□□□□ 0.37
UPF1-201ENST00000262803 TAGLN2P37802 199 aaKnown RBP17.38■□□□□ 0.37
UPF1-201ENST00000262803 DEFB109BQ30KR1 87 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 FAM173AQ9BQD7 235 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 GPR173Q9NS66 373 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 FAM96BQ9Y3D0 163 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 TEX51A0A1B0GUA7 166 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 PEX11BO96011 259 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 NME2P22392 152 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 TGM4P49221 684 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 IL11RAQ14626 422 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 ST6GAL1P15907 406 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 LAIR1Q6GTX8 287 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 YIPF6Q96EC8 236 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 OCEL1Q9H607 264 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 CRLF2Q9HC73 371 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 QPCTLQ9NXS2 382 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 PRSS37A4D1T9 235 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 FITM1A5D6W6 292 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 TGOLN2O43493 480 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 PDGFAP04085 211 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 M6PRP20645 277 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 OR52I2Q8NH67 350 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 ADAM19Q9H013 955 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 ARPC4-TTLL3A0A0A6YYG9 625 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 ANKRD61A6NGH8 418 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 M0R1B8 84 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 C1QBP02746 253 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 ACKR3P25106 362 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 AQP6Q13520 282 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 PLA1AQ53H76 456 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 RHNO1Q9BSD3 238 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 ANKRD10Q9NXR5 420 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 TOGARAM1Q9Y4F4 1720 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 IGHV3-20A0A0C4DH32 117 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 LGALS8O00214 317 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 KISS1RQ969F8 398 aaPredicted RBP17.37■□□□□ 0.37
UPF1-201ENST00000262803 ARSGQ96EG1 525 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 DDOQ99489 341 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 IL21Q9HBE4 155 aa17.37■□□□□ 0.37
UPF1-201ENST00000262803 HOXC4P09017 264 aaPredicted RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 TIGITQ495A1 244 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 GABRG1Q8N1C3 465 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 PXT1Q8NFP0 134 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 FN3KRPQ9HA64 309 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 SOX18P35713 384 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 CLDN15P56746 228 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 DGCR2P98153 550 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 JMJD6Q6NYC1 403 aaPredicted RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 FJX1Q86VR8 437 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 NTN4Q9HB63 628 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 SSC5DA1L4H1 1573 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 SPTY2D1-AS1A0A0U1RR47 76 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 SH2D7A6NKC9 451 aaPredicted RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 CLPPQ16740 277 aaPredicted RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 C11orf91Q3C1V1 193 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 RGS7BPQ6MZT1 257 aaPredicted RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 WFDC8Q8IUA0 241 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 M1APQ8TC57 530 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 MRPS24Q96EL2 167 aaKnown RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 CACNA1CQ13936 2221 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 TRGV8A0A0C4DH27 118 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 NRG2O14511 850 aaPredicted RBP17.36■□□□□ 0.37
UPF1-201ENST00000262803 LALBAP00709 142 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 NPY4RP50391 375 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 YIPF5Q969M3 257 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 ARRDC1-AS1Q9H2J1 176 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 ZNF385DQ9H6B1 395 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 TAS2R5Q9NYW4 299 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 F5P12259 2224 aa17.36■□□□□ 0.37
UPF1-201ENST00000262803 OR5H15A6NDH6 313 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 OR5H14A6NHG9 310 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 OR5H1A6NKK0 313 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ICOSLGO75144 302 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 GIPP09681 153 aaPredicted RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 FABP5Q01469 135 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 RNPS1Q15287 305 aaKnown RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 AGBL4Q5VU57 503 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 F10P00742 488 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 POU2F2P09086 479 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 F2RP25116 425 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ADGRF3Q8IZF5 1079 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ARHGEF39Q8N4T4 335 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ZNF439Q8NDP4 499 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 SPACA9Q96E40 222 aaPredicted RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 TAS2R4Q9NYW5 299 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms